SNPMiner Trials: Clinical Trial Report
Report for Clinical Trial NCT02922764
 Developed by Shray Alag, 2019.
SNP Clinical Trial Gene 
      Study RGX-104-001 is a Phase 1, first-in-human, dose escalation and expansion study of
      RGX-104, an oral small molecule targeting the liver X receptor (LXR), as a single agent and
      in combination with nivolumab. RGX-104 activates LXR, resulting in depletion of both
      myeloid-derived suppressor cells (MDSCs) as well as tumor blood vessels. MDSCs block the
      ability of T-cells and other cells of the immune system from attacking tumors.
      During the dose escalation stage, multiple doses and schedules of orally administered RGX-104
      with or without nivolumab (single agent or combination therapy) will be evaluated in patients
      with advanced solid tumors and lymphoma (i.e., locally advanced and unresectable, or
      metastatic) who have had progressive disease (PD) on available standard systemic therapies or
      for which there are no standard systemic therapies of relevant impact.
      In the expansion stage of the study, additional patients with epithelial ovarian carcinoma
      (EOC), melanoma, non-small cell lung cancer (NSCLC), small cell lung cancer (SCLC), renal
      cell cancer (RCC), bladder cancer (BLC), or triple negative breast cancer (TNBC) will be
      treated at the MTD (or maximum tested dose if no MTD is identified, or dose below the MTD if
      there is evidence suggesting a more favorable risk/benefit profile). This stage will provide
      further characterization of the safety, efficacy, PK, and pharmacodynamics, including
      biomarkers of immunologic activity and LXR target activation, of RGX-104 as a single agent
      (EOC) and in combination with nivolumab (melanoma, NSCLC, SCLC, RCC, BLC, and TNBC).
    
Name: RGX-104
Type: Drug
 Single agent RGX-104  RGX-104 in combination with nivolumab  
Name: Nivolumab
Type: Drug
 RGX-104 in combination with nivolumab 
  Primary Outcomes 
 Measure: Maximum tolerated dose (MTD), or the maximum tested dose at which multiple dose-limiting toxicities (DLTs) are not observed, of RGX-104 as a single agent, and separately, in combination with nivolumab.
 Time: 6 months
 Measure: Overall response rate associated with RGX-104 treatment as a single agent, and separately, in combination with nivolumab.
 Time: 24 months
 Measure: Progression-free survival associated with RGX-104 treatment as a single agent, and separately, in combination with nivolumab.
 Time: 24 months
 Measure: Number of participants with treatment-emergent adverse events with severity as determined by CTCAE v4.03 associated with RGX-104 treatment as a single agent, and separately, in combination with nivolumab.
 Time: 24 months
  Secondary Outcomes 
 Measure: Pharmacokinetics: Maximum Plasma Concentration (Cmax) of RGX-104.
 Time: 24 months
 Measure: Pharmacokinetics: Area Under the Curve (AUC) of RGX-104.
 Time: 24 months
Purpose: Treatment
Allocation: Non-Randomized
Parallel Assignment 
There is one SNP
SNPs
1 V600E 
ROS
                  rearrangement, BRAF V600E mutation) for which FDA-approved targeted therapy is
                  available and, if positive, the patient should have received such therapy prior
                  to study entry. --- V600E --- 
-  In the absence of relevant EGFR mutation, ALK translocation, ROS rearrangement or
                  BRAF V600E mutation, the patient must have received first-line therapy with a
                  platinum-based regimen, be intolerant to, or refused such treatment. --- V600E --- 
-  A patient with a tumor with an EGFR mutation, ALK translocation, ROS
                  rearrangement, or BRAF V600E mutation may have received appropriate inhibitors of
                  EGFR, ALK, ROS or BRAF in addition to 3 prior lines of therapy for metastatic
                  disease. --- V600E --- 
HPO Nodes
HPO:Lymphoma 
Genes 94
BLM  MYC  CDKN2A  KRAS  MYD88  RMRP  RAG1  RAG2  MALT1  MSH6  RASGRP1  LIG4  TCF4  PMS2  ICOS  NRAS  WAS  WIPF1  CD19  MS4A1  USB1  IGH  TINF2  RB1  DCLRE1C  TNFSF12  RTEL1  CTC1  CD27  CD28  PIK3R1  PRF1  NTHL1  TP63  POLE  HLA-DRB1  NFKB1  NFKB2  RECQL4  RAD54B  CHEK2  TNFRSF13C  APC  MLH1  TNFRSF13B  DKC1  BIRC3  XIAP  CASP10  NBN  PRKCD  COL14A1  FOXP1  CD81  PARN  NOP10  CCND1  BCL10  BCL2  MSH2  CHD7  CTLA4  ATM  BCL6  MAGT1  RUNX1  TNFRSF1B  XRCC4  WRAP53  PTEN  MDM2  FAS  NHP2  ADA  FASLG  CR2  SH2D1A  TERC  AAGAB  KIT  TERT  NSUN2  IL2RG  LYST  RNF43  ZAP70  DNASE1L3  TP53  RAD54L  ITK  STAT3  IL7R  KIF11  PNP   hr>Neoplasm 
Genes 762
CDKN1A  CDKN1B  CDKN1C  CDKN2A  HFE  CDKN2B  CDKN2C  GDF5  TSR2  CDKN2D  H19-ICR  TMEM67  RPL26  RPL27  TREX1  ASXL1  ERBB2  SCN11A  POU6F2  ERCC2  RPL35A  ERCC3  BRIP1  ERCC4  ABL1  ERCC5  CEBPA  ERCC6  PDE6D  GCM2  CEL  PDGFB  PDGFRA  PDGFRL  MNX1  PDGFRB  LEMD3  ENPP1  CTSC  ESR1  HLA-DRB1  SLC26A4  MAX  APC2  RPS7  TMC6  TMEM216  TRPS1  ACTB  RPS10  MC1R  MC2R  BLNK  RPS14  RPS15A  ACTG2  ETV6  TCIRG1  DNAJC21  EVC  HMBS  L2HGDH  RPS17  MCM4  RPS19  RPS20  TSC1  TSC2  EWSR1  EXT1  EXT2  RPS24  RPS26  RPS27  ACVR1  EYA1  RPS28  RPS29  MAGT1  ACVRL1  MDH2  MDM2  ADA  HNF4A  ADAR  TRIP13  LYST  PICALM  ALX4  F13A1  TERF2IP  PHF21A  F13B  RYR1  MAP3K1  AXIN1  TBC1D24  AXIN2  BAP1  CHRNG  TWIST1  MEN1  TNFRSF4  FANCA  FANCC  FANCD2  FANCE  TYR  GFI1B  FAH  MET  TYROBP  FANCB  FANCF  FANCG  SERPINA1  ARID1B  SAMD9L  AP2S1  MGAT2  DLC1  ICOS  DMRT3  SFTPA2  PIGA  MGMT  MBTPS2  CLCNKB  HOXD13  PIK3CA  PIK3R1  ACAN  FDPS  HPGD  JAG1  RNASEH2C  RECQL4  SCN4A  HACE1  RAD54B  NR0B1  MITF  AHCY  GPC4  SCN9A  SCN10A  HRAS  MLF1  MLH1  CTHRC1  TJP2  GTF2H5  FGF3  CC2D2A  ANTXR1  LMOD1  PLAG1  FGF8  COL14A1  AKT1  NOP10  ASPSCR1  FGFR1  PLCB4  FGFR3  PLCD1  FGFR2  HAX1  MMP1  MAD2L2  UROD  FH  MN1  ALK  HSPA9  SEC23B  SEC23A  CARD14  SDHA  RAD54L  SDHB  SDHC  SDHD  FOXI1  COL1A1  FOXC2  COL2A1  FOXE1  MPL  VEGFC  ALX3  PMS1  FOXO1  VHL  COL4A5  FLI1  MRE11  HSPG2  FLNA  KLF11  COL7A1  PIGL  SEMA3C  BIN1  FLT3  PMS2  FLT4  COL11A2  CIB1  CCDC22  WAS  COMP  FN1  WIPF1  OFD1  KLF6  ADAMTS3  RNASEH2A  LIN28B  SFTPC  CTC1  PUF60  WHCR  NSD2  PPM1D  NELFA  MAP3K8  INPP5E  POLD1  POLE  WNT5A  POLH  GNPTAB  SH3GL1  POT1  SH3KBP1  FERMT1  POLR1C  WRN  TUBB  KCNAB2  WT1  APC  IKBKG  SHH  PORCN  SHOX  BIRC3  POU2AF1  XIAP  NLRP1  SAMHD1  XPA  MSH2  CHD7  XPC  MSH3  ZSWIM6  IDH1  MINPP1  IDH2  TMEM107  TXNRD2  XRCC2  XRCC4  SIX1  SIX3  FANCM  SKI  FAS  FCN3  NHP2  FASLG  CR2  CTSA  TMEM127  CREB1  CREBBP  AR  ZAP70  ABCC6  CRKL  ZIC2  FAN1  MSR1  MST1  PPP2R1B  SETD2  C2CD3  MLH3  PIEZO2  IGF2  ARSA  IGF2R  MTAP  MMEL1  STS  GNA14  PMVK  SLC12A3  COX1  COX2  UBE2T  COX3  IGH  SLC17A9  DYNC2LI1  PRCC  ELMO2  ASCL1  PRF1  TP63  SLCO2A1  IGHM  MTM1  ND1  SETBP1  ND4  ND5  ND6  SNAI2  PTCH2  RNR1  MPLKIP  PRKAR1A  SMARCB1  ABCB11  WNT10A  FLCN  SMARCD2  APPL1  PRKCD  FOXP1  TRNF  C11ORF95  CTBP1  SMO  NR5A1  TRNH  CTLA4  TRNK  IGLL1  TRNL1  ATM  RERE  MAPK1  CTNNB1  TRNP  TRNQ  TRNS1  TRNS2  TRNW  KDSR  SUFU  MAP2K1  MAP2K2  CEP57  FZD2  PRDM16  IL2RG  G6PC  SLC37A4  STAG3  PALLD  TRIM37  SLX4  PRLR  MUTYH  H19  MVD  IL7  MVK  IL7R  SOS1  MYC  SOX2  GABRD  CYLD  MYCN  TET2  SOX9  MYD88  IL12A  IL12RB1  MYF6  TCTN3  ATP6V1B2  INTU  MYH8  MYH11  SAMD9  ATP7A  DIS3L2  ATP7B  PSAP  WWOX  MYLK  HDAC4  ATR  SPIB  ACD  ATRX  SPINK1  ING1  TNFSF12  RTEL1  INHBA  PSENEN  INS  GJB4  CYP11B1  CYP11B2  GJB6  ARHGAP26  KIF1B  MAFA  RNF113A  SRC  GAS1  GATA1  CPLX1  GATA2  GATA4  PDX1  BARD1  GBA  CDH23  SRP54  FGFRL1  IRF1  NBN  SRP72  IRF5  DAXX  SRY  GCGR  CCND1  BCL2  SMARCAD1  GCK  NDP  KEAP1  TNFRSF10B  BCL6  RB1CC1  DCC  GPR101  PTCH1  PTEN  GDF2  SSX1  BCR  SSX2  ADA2  NSUN2  NEK9  DDB2  GDNF  DPM1  GINS1  RNF43  GFI1  PTH1R  STAR  BDNF  NAGS  STAT1  ITK  STAT3  KIAA0753  NOD2  BLK  BLM  NUTM1  JAK2  STK4  IFIH1  GJA1  STK11  MALT1  NEK1  PTPN3  FAM20C  BMPR1A  BMPR1B  GJB2  GJB3  CCM2  PTPN11  ARL6IP6  KARS  NEUROD1  NF1  ANTXR2  DHH  GPC3  BRCA1  BRAF  BRCA2  NF2  TINF2  SDHAF2  WASHC5  KCNH1  CXCR4  SQSTM1  GLI1  GLI2  GLI3  ABCC8  NBEAL2  DHCR7  DHCR24  KCNJ10  NFKB1  BTK  KCNJ11  NFKB2  BUB1  CYP26C1  BUB1B  VAMP7  TMC8  MFN2  DKC1  KCNQ1  C1S  GNA11  KDR  TRPV3  BCL10  DLEC1  GNAI3  GNAQ  CDC73  BMPER  GNAS  SEMA4A  GNB1  NME1  TMEM231  FOXH1  PHOX2B  CPLANE1  MAPRE2  NODAL  TAL1  KIT  TAL2  KCNQ1OT1  TNFSF15  DNASE1L3  NOTCH1  NOTCH3  KIF11  CDON  DNM2  DNMT3A  PNP  RAD21  TBX2  RAD51  RAD51C  RNASEH2B  RAD51D  KRAS  NPM1  RAF1  KRT1  RAG1  RAG2  CACNA1S  KRT5  TCF4  KRT6B  EFL1  HNF1A  FAT4  HNF1B  KRT9  TCF3  CYSLTR2  KRT10  KRT14  EVC2  KCNE3  RARA  RPGRIP1L  KRT16  CARMIL2  NRAS  SRD5A3  KRT17  SASH1  RASA1  RHBDF2  SH2B3  USB1  RB1  TCOF1  NRTN  DOCK8  DYNC2H1  CALR  GPR35  SLC26A2  NTHL1  NTRK1  MYO1H  NUMA1  DVL1  ASCC1  DVL3  NSD1  LAMA3  AGGF1  GPR143  CASP8  B3GALT6  LAMB3  CASP10  GJC2  NR4A3  CASR  LAMC2  FANCL  RELA  OCA2  TDGF1  NUP214  OCRL  AIP  REST  RET  MLLT10  RUNX1  WRAP53  CBFB  ECE1  GPC6  DLL1  TEK  CBL  TERC  ECM1  AAGAB  TERT  OGG1  TFAP2A  DICER1  WDPCP  PALB2  EDN1  LETM1  OPCML  MSTO1  EDN3  EDNRB  TFE3  ZFPM2  RFWD3  KRIT1  KIF7  SIX6  TG  RAD50  ESCO2  VANGL2  RMRP  TBX18  TGFBR2  POLR1D  SLC22A18  TGIF1  MSH6  COL18A1  USP8  RASGRP1  LIG4  SEMA3D  GTF2E2  KLLN  RNASEL  THPO  SF3B1  HMGA2  ALX1  LMNA  RNF6  CD19  MS4A1  MTMR14  EGFR  LMO1  DCLRE1C  ABCA5  LZTS1  LMX1B  CD27  TRIM28  CD28  VANGL1  CCBE1  SBDS  FANCI  BRD4  SLC25A13  MRAP  ARMC5  LPP  SLC49A4  CHEK2  TREM2  TNFRSF13C  FIBP  LRRC8A  ELANE  TNFRSF13B  LRP5  CD70  SPRED1  CD79A  CD79B  CD81  SLC45A2  PRKN  PARN  HABP2  TAF15  PAX3  EIF2AK4  PAX4  RPL35  PAX6  GREM1  PAX7  SPRTN  TNFRSF1B  BUB3  KAT6B  HBB  PDCD10  RNF139  SH2D1A  ENG  CDH1  EPCAM  RSPO1  NNT  RPL5  TNPO3  CD96  EP300  DISP1  TOP2A  TP53  RPL10  RPL11  SMAD4  RPL15  CDK4  RPL18   hr>