SNPMiner Trials by Shray Alag


SNPMiner Trials: Clinical Trial Report


Report for Clinical Trial NCT02730884

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

A Phase II Single-Arm Study of the Efficacy and Safety of Oral Rigosertib in Patients With Myelofibrosis (MF) and Anemia

The goal of this clinical research study is to learn if rigosertib can help to control MF in patients with anemia. The safety of this drug will also be studied. This is an investigational study. Rigosertib is not FDA-approved or commercially available. It is currently being used for research purposes only. The study doctor can explain how the study drug is designed to work. Up to 35 participants will be enrolled in this study. All will be enrolled at MD Anderson.

NCT02730884 Leukemia Myelofibrosis Anemia Splenomegaly
MeSH: Anemia Primary Myelofibrosis Splenomegaly
HPO: Anemia Splenomegaly

2 Interventions

Name: Rigosertib

Description: Participants take 560 mg Rigosertib by mouth in the morning (two 280 mg capsules) and 560 mg Rigosertib in the afternoon.

Type: Drug

Rigosertib

Name: Questionnaire

Description: Quality of life questionnaire completed on Day 1 of Cycle 1. It should take about 10-15 minutes to complete.

Type: Behavioral

Rigosertib


Primary Outcomes

Description: Spleen response defined as ≥ 35% spleen volume reduction from Baseline, which must be confirmed by MRI or CT measurement per revised International Working Group for Myelofibrosis Research and Treatment (IWG MRT) response criteria.

Measure: Change in Spleen Volume

Time: Baseline and 48 weeks

Description: Anemia response defined as the proportion of transfusion-independent patients with Hgb increase of at least 2 g/dL from Baseline or the proportion of transfusion-dependent patients becoming transfusion independent for at least 12 weeks as defined in 2013 International Working Group for Myelofibrosis Research and Treatment (IWG-MRT) criteria.

Measure: Change in Anemia Response

Time: Baseline and 48 weeks

Secondary Outcomes

Description: Symptoms response defined as the proportion of patients achieving ≥ 50% reduction in the Myeloproliferative Neoplasm Symptom Assessment Form Total Symptom Score (MPN-SAF TSS) at any time before Week 48.

Measure: Symptoms Response

Time: 48 weeks

Purpose: Treatment

Single Group Assignment


There is one SNP

SNPs


1 V617F

Measurement of JAK2 V617F allele burden in BM samples, if not done within 6 months prior to Screening, must be provided with the Screening BM biopsy/aspirate report (patients are eligible regardless of JAK2 mutation status); 3. Anemia or RBC-transfusion dependence defined as follows: a) Anemia: defined for the purpose of this protocol as 1) a hemoglobin level <10 g/L on every determination over 84 days before study-entry, without RBC-transfusions, or 2) a hemoglobin level <10 g/L on a patient that is receiving RBC-transfusions periodically but not meeting criteria for transfusion-dependent patient as defined below. --- V617F ---



HPO Nodes


HPO:
Anemia
Genes 468
EPHB4 CFH TACO1 TPP2 TSR2 EPO TMEM67 RPL26 RPL27 GLRX5 ABCA1 SLC29A3 ERCC2 RPL35A ABCB7 ERCC3 BRIP1 ERCC4 IRX5 HK1 HLA-B PDGFRA PDHA1 DNAJC19 MARS VPS45 NT5C3A HLA-DRB1 RPS7 RPS10 PEPD RPS14 RPS15A ETV6 TCIRG1 DNAJC21 MECOM RPS17 RPS19 IKZF1 ACTN4 EWSR1 HMGCL CD46 EXT2 RPS24 RPS26 TMEM173 RPS27 ACVR1 HMOX1 RPS28 RPS29 PFKM ACVRL1 F2 ADA ADAR LYST PGK1 ALX4 MYSM1 NLRC4 PHF21A PGM3 TNFRSF4 FANCA FANCC FANCD2 FANCE FANCB FANCF FANCG SAMD9L ICOS PIGA CLCN7 CLCNKB CIITA COG1 COG6 FDX2 HPGD SHPK HPRT1 RECQL4 FECH AGXT SNX10 PKLR SCO1 GTF2H5 AK1 CRIPT AK2 ALG8 UMPS NOP10 ALAD ALAS2 MMP1 MAD2L2 PLEC UROD UROS ALDOA SEC61A1 KDM6A HSPA9 SEC23B SDHA SDHB SDHC ALPL PML MPL COL4A1 FLI1 COL7A1 FOXRED1 KIF23 FMO3 COL17A1 NDUFAF5 ANK1 WAS WIPF1 OSTM1 CISD2 CTC1 WFS1 RRM2B POLG SMARCAL1 NDUFAF3 COX6B1 FERMT1 SLC19A2 LARS WT1 APC AIRE COX8A COX10 BIRC3 XIAP COX15 CP NLRP1 DGKE APOA1 CHD7 FASTKD2 IDH1 IDH2 CPOX NABP1 XRCC2 XRCC4 FANCM CFI FAS NHP2 FASLG CR2 SP110 COA8 ZAP70 SLC2A1 MMACHC SLC4A1 CASK MTFMT IFNG IFNGR1 LIPT1 PIGT TNFSF11 ACAD8 FAM111A GNA14 SLC12A3 LAT UBE2T G6PC3 IGH KLF1 MTHFD1 FARS2 PRF1 RFXANK SLCO2A1 HBB-LCR LPIN2 PRKACG MTR MPLKIP PRKAR1A PUS1 MTRR SMARCD2 PRKCD FOXP1 NDUFAF6 SMPD1 CTLA4 HAMP TRNN TRNS1 TRNW STX11 MUC1 IL2RA CTSK IL2RG G6PD LMBRD1 SLX4 MMUT MVK IL7R LYRM7 COX20 TET2 MYD88 UBR1 IL12B IFT140 NDUFS7 ZBTB16 ZBTB20 SAMD9 ATP7B PSAP GALT ACD ATRX TNFSF12 RTEL1 PET100 C15ORF41 PIEZO1 SPTA1 SPTB RNF113A VPS33A PSMB4 GATA1 PSMB8 PSMB9 CD55 GBA SRP54 NBN UNC13D DAXX SLC46A1 CCND1 DBH NDUFA2 NHLRC2 TNFRSF11A FTCD NDUFA4 ITGA2B CLPX NDUFA9 PTEN NDUFA10 GDF2 COQ2 NPHP4 ADA2 NSUN2 ITGB3 NDUFB8 ITGB4 NDUFS1 NDUFS2 ZBTB24 MMADHC PTH1R PLEKHM1 NDUFS3 PHGDH NDUFV1 NDUFS4 STAT1 ITK STAT3 NDUFS8 NDUFV2 STAT5B HELLPAR NOD2 STIM1 JAK2 CBLIF CDAN1 STK11 MALT1 BMPR1A SARS2 BPGM GLA NDUFA12 BRCA1 BRCA2 TINF2 GCLC SURF1 NFKB1 BTK DHFR NFKB2 SLC25A38 ABCD3 ABCD4 KCNN4 DKC1 PACS2 FIP1L1 ATP11C BCL10 RBM8A COX4I2 AMMECR1 NME1 KIT TALDO1 ABCG5 ABCG8 CA2 TBCE FERMT3 GP1BA PNP DNMT3B FOXP3 RAD51 RAD51C NPHP1 TBXAS1 GPI KRAS NPM1 SFXN4 RAG1 RAG2 SCO2 EFL1 KRT14 CAD RARA SLC11A2 AMN NRAS SRD5A3 MLX USB1 TCN2 NDUFAF2 CALR TMPRSS6 GPX1 NUMA1 SLC19A3 LAMA3 AGGF1 FARSB ABCB6 LAMB3 CASP10 DNM1L CASR LAMC2 FANCL REN ADAMTS13 OCRL LCAT CUBN WRAP53 SLC7A7 TYMP TEK MPIG6B LARS2 ECHS1 TERC TBL1XR1 TERT RFX5 RFXAP TF OPA1 PALB2 RHAG NLRP3 RFWD3 GSS YARS2 PNPO TFR2 TFRC TGFB1 TTC7A MMAA NDUFA13 RMRP RASGRP1 ORAI1 LIG4 GTF2E2 LIPA CD3G KMT2D TRNT1 THRA CD19 MS4A1 DCLRE1C CDCA7 AASS SBDS FANCI GYPC BTNL2 SCARB2 ISCU PRDX1 CD40LG ERCC6L2 TNFRSF13C CD59 ELANE TNFRSF13B STEAP3 CD81 PARN RPL35 TNFAIP3 GREM1 LRBA HBA1 HBA2 NHEJ1 HBB SH2D1A HBD MMAB ENG HBG1 PCCA HBG2 PCCB RPL5 EPB41 TP53 EPB42 RPL11 SMAD4 COX14 RPL15 PCNT RPL18 HELLS TPI1
Splenomegaly
Genes 320
CYBB IL10 HFE TET2 TPP2 MYD88 SOX10 IL12A TMEM67 TREX1 ATP6V1B2 NLRP12 GLRX5 ABCA1 SLC29A3 GALE ABL1 ATP6AP1 ERCC6 HK1 ATP7B PSAP MAN2B1 ATRX HLA-B PDGFRA TNFSF12 RTEL1 ERAP1 VPS45 IFT172 C15ORF41 HLA-DRB1 PIEZO1 INPPL1 SPTA1 CYBC1 SPTB B2M NCF1 VPS33A PSMB4 NAGLU AKR1D1 GATA1 GATA2 PEPD PSMB8 SCYL1 PSMB9 GBA PEX7 TCIRG1 MCM4 NCF2 NCF4 CCND1 BCL2 ATP8B1 TNFRSF11A BCL6 RREB1 PTEN ADA BCR ADA2 F5 LYST DPM1 KLRC4 PLEKHM1 MEFV NLRC4 ITK MKS1 STAT4 HIRA RNU4ATAC ABCB4 TNFRSF4 NOD2 JAK2 IFIH1 GFI1B FAH ERCC8 CDAN1 PHKG2 PHYH NEU1 SAMD9L ICOS PTPRC BPGM GPC3 GLB1 ALMS1 BRAF CLCN7 TINF2 COG6 PIK3CA CCDC47 KCNH1 PIK3CD BTD AGA PIK3R1 HPGD NBEAL2 DGUOK DHCR24 NFKB1 SUMF1 NFKB2 UFD1 MIF VPS13A GPC4 SNX10 PKLR ABCD3 PKHD1 WDR35 FGA PEX2 KCNN4 DKC1 CC2D2A CYP7B1 UMPS CCR1 AKT1 C4A NOP10 ALAS2 COX4I2 UROS ALDOA TALDO1 SLC30A10 AP3D1 COG4 GNS DNASE1L3 ABCG5 RAB27A ABCG8 CFAP410 IL23R SEC23B NOTCH1 TBX1 ALG1 NOTCH2 CA2 FERMT3 GP1BA GP1BB PNP FOXP3 HJV MPL NPC1 GPD1 TBXAS1 GPI KRAS RAG1 RAG2 TCF4 FAT4 DCDC2 ITCH FMO3 RPGRIP1L NRAS ANK1 COMT OSTM1 SH2B3 USB1 ADAMTS3 GNE RNASEH2A CTC1 CALR GPR35 COG7 INPP5E SGSH FOS GNPTAB AGPAT2 DOLK HGSNAT IRF8 GLIS3 CASP8 XIAP CASP10 NLRP1 CASR SLC39A4 APOA1 NPC2 CHD7 APOC2 CAV1 LBR CPOX LCAT APOE CCDC115 PPARG RUNX1 IDS WRAP53 SLC7A7 IDUA AP3B1 MPIG6B FAS NHP2 FASLG CR2 TERC TERT JMJD1C ZAP70 SLC2A1 CLDN1 RHAG NLRP3 SLC4A1 CASK TGFB1 IFNGR1 MST1 SLC17A5 RMRP RASGRP1 LIG4 HSD3B7 OTC LIPA TNFSF11 THPO ARSB GPIHBP1 SEC24C LAT LMNA CD19 G6PC3 MS4A1 IGH ARVCF KLF1 DCLRE1C LACC1 DYNC2LI1 ASAH1 CD27 IL12A-AS1 CD28 GUSB CCBE1 PRF1 SLCO2A1 GYPC SCARB2 TLR4 CD40LG LPIN2 TNFRSF13C ABCB11 TNFRSF13B STEAP3 DDRGK1 PRKCD UBAC2 CD81 CARD11 PARN SMPD1 CAVIN1 BSCL2 CTLA4 FUCA1 ATM HAMP CTNS TNFRSF1A TNFRSF1B HBA1 OCLN HBA2 HBB STX11 SH2D1A IL1RN LYZ HBG1 IL2RA HBG2 CTSK IL2RG G6PD IL6 MMUT EPB41 GAA TP53 EPB42 MVK IL7R PIGM CYBA TPI1