SNPMiner Trials by Shray Alag


SNPMiner Trials: Clinical Trial Report


Report for Clinical Trial NCT00887562

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

A Phase IIa Double-Blind, Randomized, Placebo-Controlled, Dose-Finding Study of Idebenone in the Treatment of Mitochondrial Encephalopathy Lactic Acidosis and Stroke-like Episodes

The purpose of this study is to compare the efficacy of two (2) different doses of idebenone with that of a placebo over a one month period on cerebral lactate concentration as measured by magnetic resonance spectroscopy.

NCT00887562 MELAS Syndrome
MeSH: Brain Diseases Acidosis Acidosis, Lactic MELAS Syndrome Mitochondrial Encephalomyopathies
HPO: Acidosis Encephalopathy Lactic acidosis Metabolic acidosis

3 Interventions

Name: Idebenone

Description: 900 mg/day for 1 month

Type: Drug

Idebenone 900 mg/day

Name: Idebenone

Description: 2250 mg/day for 1 month

Type: Drug

Idebenone 2250 mg/day

Name: Placebo

Description: Placebo - No idebenone

Type: Other

placebo


Primary Outcomes

Description: To compare the efficacy of 1 month treatment with 2 different doses of idebenone with that of placebo on cerebral lactate concentration as measured by magnetic resonance spectroscopy (MRS)

Measure: Mean Change in Cerebral Lactate Concentration (as Measured by Magnetic Resonance Spectroscopy)

Time: Up to 4 weeks from baseline

Secondary Outcomes

Description: To compare the efficacy of 1 month treatment with 2 different doses of idebenone with that of placebo on venous lactate concentration

Measure: Mean Change in Venous Lactate Concentration

Time: Up to 4 weeks from baseline

Description: To assess changes following 1 month treatment with 2 different doses of idebenone with that of placebo in fatigue as assessed by the Fatigue Severity Scale (FSS). Scale score minimum is 9 (least fatigue) and maximum is 63 (maximum fatigue). Scores of 36 or less indicate possibility that patient may not be suffering from fatigue, while scores 36 and over suggest suffering from fatigue

Measure: Mean Change in Score on the Fatigue Severity Scale (FSS)

Time: Baseline and Week 4

Purpose: Treatment

Allocation: Randomized

Parallel Assignment


There is one SNP

SNPs


1 A3243G

Inclusion Criteria: - Diagnosis of MELAS with confirmed A3243G mtDNA mutation, or evidence of central nervous system involvement (cognitive problems, migraines, memory loss) - Cerebral lactate level equal to or greater than 5.0 i.u. at baseline - Patients at least 8 and < 65 years of age at baseline - Patients with a body weight > 37 kg/82 lbs at baseline - Stable co-medication/vitamins/supplements within 1 month prior to baseline - Patients who in the opinion of the investigator are able to comply with the requirements of the study, including swallowing the study medication - Negative urine pregnancy test at screening and baseline (female patients of childbearing potential) Exclusion Criteria: - Contraindication to MRS (e.g. --- A3243G ---

metal implant, claustrophobia) - Stroke like event within 2 months prior to baseline - Treatment with idebenone at any dose, or coenzyme Q10 at doses above 100mg/d within 1 month prior to baseline - Inadequate contraception use - Pregnancy and/or breast-feeding - Clinically significant abnormalities of clinical hematology or biochemistry including, but not limited to, elevations greater than 1.5 times the upper limit of normal of aspartate aminotransferase (AST), alanine aminotransferase (ALT) or creatinine - Current abuse of drugs or alcohol - Participation in a trial of another investigational drug within the last month - Other factor that, in the investigator's opinion, excludes the patient from entering the study Inclusion Criteria: - Diagnosis of MELAS with confirmed A3243G mtDNA mutation, or evidence of central nervous system involvement (cognitive problems, migraines, memory loss) - Cerebral lactate level equal to or greater than 5.0 i.u. at baseline - Patients at least 8 and < 65 years of age at baseline - Patients with a body weight > 37 kg/82 lbs at baseline - Stable co-medication/vitamins/supplements within 1 month prior to baseline - Patients who in the opinion of the investigator are able to comply with the requirements of the study, including swallowing the study medication - Negative urine pregnancy test at screening and baseline (female patients of childbearing potential) Exclusion Criteria: - Contraindication to MRS (e.g. --- A3243G ---

Given that there is no effective treatment for MELAS, the investigators propose a Phase II proof of concept trial of idebenone to study its preliminary efficacy in patients with MELAS and the A3243G mtDNA mutation, and to study its safety and tolerability in this patient group. --- A3243G ---

The investigators propose to evaluate 21 patients with the A3243G mitochondrial DNA mutation and MELAS (defined by a history of either seizures or stroke). --- A3243G ---



HPO Nodes


HPO:
Acidosis
Genes 306
LYRM7 ATP5F1D CYC1 ATP5F1E TACO1 COX20 SDHAF1 USP18 ATP6V1B1 IBA57 CHCHD10 NDUFS7 PLVAP GALT ACADM ACADS AUH MICOS13 MYO5B ACAT1 PDSS1 ACAT2 EARS2 PDHA1 PDHB DNAJC19 MARS PET100 INS CYP11A1 NADK2 TMEM126B MRPL44 INSR GLYCTK GATA3 PDX1 HLCS GCDH BCKDHA BCKDHB HMGCL GCK NDUFA1 SLC25A26 NDUFA2 MCCC2 NDUFA4 MCCC1 ITGA3 NDUFA6 DBT MDH2 NDUFA9 NDUFA10 SUCLG1 SUCLA2 COQ2 HNF4A NDUFB3 WNK1 BCS1L NDUFB8 NDUFB9 GFER NFU1 NDUFS1 WARS2 ELAC2 NDUFS2 MRPS22 NDUFS3 NDUFV1 NDUFS4 TUFM RYR1 NDUFS6 NDUFS8 NDUFV2 FBXL4 IVD SLC25A3 KLHL3 PHKG2 TRMT10C COA6 GK STX3 FBP1 NDUFA12 AARS2 SYNJ1 CLPB CLCNKB VPS33B ST3GAL5 COQ8A HPD FDX2 BTD ABCC8 KCNJ5 SURF1 DGUOK JAG1 KCNJ11 TMEM70 COQ9 AGXT MIPEP SCNN1A SCNN1B WDR35 C1QBP SCNN1G SCO1 ACSF3 DLAT DLD LIPT2 RARS2 NR3C2 MCEE HSD3B2 UQCRB UQCRC2 MTO1 RMND1 FH GTPBP3 TRMT5 CARS2 TXN2 ALDOB ALDH6A1 EIF2AK3 KYNU NAXE WNK4 NOTCH2 SDHA TAZ CA2 SDHD CA5A CUL3 MPV17 SFXN4 CACNA1S LIAS NDUFB11 SCO2 DPYS PDSS2 FOXRED1 CAD ISCA1 SLC52A1 NDUFAF5 RARS FN1 SLC25A4 HTRA2 NDUFAF2 PMPCB LYRM4 ACAD9 RRM2B POLG NDUFAF3 COX6B1 LARS SLC19A3 COX8A COX10 SHOX COX15 DNM1L TWNK MRPS16 UQCC2 FASTKD2 ADAMTS13 OCRL CPT1A TARS2 SLC7A7 TYMP LCT LDHA LARS2 ECHS1 BOLA3 OGDH PREPL COA8 NARS2 SLC2A2 PDHX MMACHC TSFM PPM1B SLC3A1 GSS NDUFA11 SLC4A1 MLYCD YARS2 PNPO SLC5A1 EPG5 MTFMT TPK1 MMAA NDUFA13 TRMU MRPS7 LRPPRC LIPT1 NDUFAF4 VIPAS39 TRNT1 OXCT1 ATP6 NDUFAF1 TRNC SLC12A3 COX1 COX2 COX3 SLC16A1 CYTB UQCC3 EHHADH ATAD3A AIFM1 FARS2 TK2 COQ4 PDP1 ETHE1 GYS2 C12ORF65 ND1 ISCU ND2 ATP6V0A4 ND3 ND4 MRPS14 PPA2 ND5 PRDX1 ND6 CLDN16 TIMM50 PUS1 AGK MRPS34 MPC1 PLPBP TRNE TRNF CAMKMT PNPLA8 NDUFAF6 UQCRQ SERAC1 HSD17B10 TRNH TRNI HADHA MRPL3 TRNK TRNL1 HADHB TRNL2 NGLY1 CTNS HADH TRNN TRNP TRNQ TANGO2 TRNS1 SLC4A4 TRNS2 RNASEH1 POLG2 TRNT TRNV SLC25A19 TRNW PC GFM1 MMAB PCCA PCCB G6PC SLC37A4 PCK1 NEUROG3 MMUT INVS COX14 ATPAF2
Encephalopathy
Genes 219
GABRB1 LYRM7 ATP5F1D CYC1 GABRB2 GABRB3 CDKN2A UBA5 ATP6V1A TREX1 IBA57 AARS TRIT1 PNKP HTRA1 NDUFS7 PIGP WWOX AMACR NADK2 SPTAN1 GLYCTK CPLX1 FADD GBA DHDDS SIK1 RNF13 GCDH CHD2 HMGCL NDUFA6 GCSH ACY1 MDH2 MDM2 SUCLG1 SUCLA2 COQ2 NDUFB3 BCS1L MECP2 ZNHIT3 MEF2C NDUFS3 NAGS NDUFS4 TUFM STAT2 NDUFS6 HNRNPU ITPA TBC1D24 NDUFV2 FBXL4 SYNGAP1 CDKL5 FCSK GUF1 KCNA2 NEUROD2 SERPINI1 STXBP1 PIGA CLCN4 KCNQ5 KCNB1 NRXN1 SYNJ1 CLPB CLCNKB GLDC SCN1A DGUOK SCN1B FRRS1L SCN2A RNASEH2C GLS TMEM70 SCN3A COQ9 SLC35A2 CLTC ARHGEF9 SCN8A GLUL PLCB1 KCNQ2 PACS2 DLD LIPT2 FGF12 GNAO1 DENND5A DNM1 CLP1 CARS2 GPT2 D2HGDH KCNT1 KYNU NAXE TBCD TBCE RNASEH2B CACNA1A CACNA1E LIAS TCF4 RANBP2 AMT SLC25A20 CUX2 CAD ROGDI ARV1 SZT2 NDUFAF2 PMPCB GPR35 ACAD9 HCN1 NTRK2 ARX SLC35A1 SLC19A3 XIAP COX15 DNM1L TWNK TSEN54 CNKSR2 GRIN1 ST3GAL3 GRIN2B GRIN2D CPT1A GABBR2 BOLA3 SLC1A2 YWHAG ADAM22 SLC2A1 TSFM CYFIP2 COG8 NECAP1 NDUFA11 TRAK1 PNPO EEF1A2 TGFB1 SLC6A1 UGT1A1 MST1 SLC25A22 SLC6A9 NBAS TH WDR45 NDUFAF4 CCDC88A PPP3CA SLC25A12 NDUFAF1 TRNC SLC12A3 KCNT2 COX1 ATAD1 COX2 COX3 CYTB TRAPPC12 TK2 COQ4 SLC25A1 ETHE1 ALG9 SLC25A15 NUS1 ND1 ASNS SLC22A5 AP3B2 TBCK NAXD ND5 ND6 TIMM50 CHEK2 DOCK7 CNPY3 SLC13A5 MPC1 TRNF SERAC1 BSCL2 TRNK TRNL1 HADH TRNQ ATP1A3 TRNS1 TRNS2 TRNV TRNW MAPK10 SH2D1A PCCA PCCB PCK1 ATP5F1A UNC80 PRNP TP53 GABRA1 PHACTR1
Lactic acidosis
Genes 153
LYRM7 ATP5F1D CYC1 ATP5F1E TACO1 COX20 MPV17 SFXN4 SDHAF1 USP18 LIAS SCO2 IBA57 PDSS2 FOXRED1 NDUFAF5 SLC25A4 MICOS13 EARS2 PDHA1 LYRM4 PDHB PET100 ACAD9 RRM2B NADK2 POLG NDUFAF3 COX6B1 LARS COX8A COX10 COX15 DNM1L MRPS16 BCKDHA BCKDHB FASTKD2 SLC25A26 DBT NDUFA10 SUCLG1 TYMP SUCLA2 COQ2 LARS2 NDUFB3 BOLA3 OGDH BCS1L PREPL COA8 GFER NFU1 NDUFS1 WARS2 ELAC2 NDUFS2 NDUFS3 PDHX NDUFS4 TUFM TSFM NDUFS6 PPM1B SLC3A1 NDUFA11 NDUFV2 MLYCD FBXL4 YARS2 TPK1 SLC25A3 TRMU MRPS7 PHKG2 LRPPRC LIPT1 TRMT10C COA6 TRNT1 FBP1 TRNC COX1 AARS2 COX2 COX3 COQ8A CYTB UQCC3 FARS2 TK2 PDP1 SURF1 ETHE1 DGUOK ND1 ISCU TMEM70 COQ9 ND4 MRPS14 ND5 MIPEP ND6 SCO1 PUS1 AGK MRPS34 DLAT DLD MPC1 TRNE LIPT2 TRNF CAMKMT PNPLA8 NDUFAF6 SERAC1 HSD17B10 TRNH HADHA TRNK TRNL1 HADHB HADH TRNN TRNQ TANGO2 MTO1 RMND1 TRNS1 FH TRNS2 GTPBP3 TRNT TRNV SLC25A19 TRNW PC ALDOB PCCA PCCB G6PC SLC37A4 PCK1 NAXE SDHA TAZ SDHD COX14 CA5A ATPAF2
Metabolic acidosis
Genes 85
IVD SLC25A3 MMAA CUL3 CACNA1S NDUFB11 IBA57 DPYS GK NDUFAF4 NDUFS7 VIPAS39 SLC52A1 STX3 PLVAP FBP1 NDUFAF1 GALT ACADM ACADS VPS33B AUH MYO5B ACAT1 EHHADH HPD BTD KCNJ5 GLYCTK PPA2 PRDX1 AGXT SCNN1A SCNN1B C1QBP SCNN1G HLCS DLD PLPBP UQCC2 GCDH NR3C2 HMGCL MCEE HSD17B10 UQCRB NDUFA2 MCCC2 CTNS UQCRC2 MCCC1 NDUFA6 TANGO2 MTO1 FH NDUFA9 SLC25A19 LCT HNF4A ALDOB GFM1 MMAB WNK1 OGDH PCCA PCCB BCS1L ALDH6A1 NDUFB8 KYNU SLC37A4 MRPS22 MMUT PDHX NDUFV1 TUFM RYR1 MMACHC GSS SLC4A1 MLYCD INVS CA5A PNPO SLC5A1