SNPMiner Trials by Shray Alag


SNPMiner Trials: Clinical Trial Report


Report for Clinical Trial NCT02114177

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

A Phase 3, Multicenter, Randomized, Open-Label Study to Investigate the Efficacy and Safety of a 12- or 8-Week Treatment Regimen of Simeprevir in Combination With Sofosbuvir in Treatment-Naïve and -Experienced Subjects With Chronic Genotype 1 Hepatitis C Virus Infection Without Cirrhosis

The purpose of the study is to evaluate the efficacy and safety of a treatment regimen of 12 weeks or 8 weeks of simeprevir in combination with sofosbuvir in chronic hepatitis C virus (HCV) genotype 1 infected men and women without cirrhosis who are HCV treatment-naïve or treatment-experienced.

NCT02114177 Hepatitis C Virus Infection
MeSH: Infection Communicable Diseases Hepatitis Hepatitis A Hepatitis C Fibrosis Liver Cirrhosis Virus Diseases
HPO: Cirrhosis Hepatic fibrosis Hepatitis

4 Interventions

Name: Simeprevir

Description: 150 participants will receive 1 capsule of 150 mg simeprevir orally once daily for 12 weeks in Arm 1.

Type: Drug

Arm 1 (Simeprevir/Sofosbuvir)

Name: Simeprevir

Description: 150 participants will receive 1 capsule of 150 mg simeprevir orally once daily for 8 weeks in Arm 2

Type: Drug

Arm 2 (Simeprevir/Sofosbuvir)

Name: Sofosbuvir

Description: 150 participants will receive 1 tablet of 400 mg sofosbuvir orally once daily for 12 weeks in Arm 1.

Type: Drug

Arm 1 (Simeprevir/Sofosbuvir)

Name: Sofosbuvir

Description: 150 participants will receive 1 tablet of 400 mg sofosbuvir orally once daily for 8 weeks in Arm 2.

Type: Drug

Arm 2 (Simeprevir/Sofosbuvir)


Primary Outcomes

Description: Participants considered to have achieved SVR12, if the hepatitis C virus ribonucleic acid (HCV RNA) is less than (<) lower limit of quantification (LLOQ; 25 international unit per milliliter [IU/mL]) detectable or undetectable at 12 weeks after the actual end of study drug treatment.

Measure: Percentage of Participants Achieving a Sustained Virologic Response 12 Weeks After the Actual End of Treatment (SVR12)

Time: 12 weeks after the end of treatment (EOT) (Week 20 or Week 24)

Secondary Outcomes

Description: Participants considered to have achieved SVR4, if the hepatitis C virus ribonucleic acid (HCV RNA) is less than (<) lower limit of quantification (LLOQ; 25 international unit per milliliter [IU/mL]) detectable or undetectable at 4 weeks after the actual end of study drug treatment.

Measure: Percentage of Participants Achieving a Sustained Virologic Response 4 Weeks After the Actual End of Treatment (SVR4)

Time: 4 weeks after the end of treatment (EOT) (Week 12 or Week 16)

Description: Participants considered to have achieved SVR24, if the hepatitis C virus ribonucleic acid (HCV RNA) is less than (<) lower limit of quantification (LLOQ; 25 international unit per milliliter [IU/mL]) detectable or undetectable at 24 weeks after the Actual end of study drug treatment.

Measure: Percentage of Participants Achieving a Sustained Virologic Response 24 Weeks After the Actual End of Treatment (SVR24)

Time: 24 weeks after the end of treatment (EOT) (Week 32 or Week 36)

Description: Ontreatment virologic response was determined by HCV RNA results satisfying a specified threshold. Measure: Percentage of Participants Achieving a On-treatment Virologic Response

Time: Day 14, Day 28, End of treatment (Week 8 or Week 12)

Description: Percentage of participants with greater than 1 log10 IU/mL increase in plasma Hepatitis C virus ribonucleic acid level from the lowest level reached (ie, lowest value measured in between baseline and current value), or a confirmed plasma HCV RNA level of greater than 100 IU/mL in participants whose plasma HCV RNA had previously been less than 25 IU/mL.

Measure: Percentage of Participants With Viral Breakthrough

Time: Up to Week 24

Description: Percentage of participants who did not achieve sustained virologic response 12, have less than 25 IU/mL undetectable plasma HCV RNA at end of treatment, and greater than or equal to 25 IU/mL plasma HCV RNA during the follow-up phase.

Measure: Percentage of Participants With Viral Relapse

Time: Up to Week 24

Description: HCVSIQv4 OBSS was a self-administered questionnaire that contained 33 items: 29 questions developed to assess severity or frequency of symptoms associated with HCV or its treatment, 3 questions regarding the impact of symptoms on work/school attendance, and 1 question regarding the impact of symptoms on daily activities. A symptom severity score (the mean of responses to the 29 symptom items); each symptom score was transformed to have a range from 0 to 100 (most severe). Higher HCV SIQv4 scores indicates worse symptom severity, more time missed from work/school, and more impairment in daily activities, respectively.

Measure: Change From Baseline in Hepatitis C Symptom and Impact Questionnaire 4 (HCV-SIQv4) Overall Body System Score (OBSS)

Time: Baseline (Day 1), Week 4, Week 8, Week 12, Follow-up Week 4, Follow-up Week 12 and Follow-up Week 24

Description: The FSS was a self-administered questionnaire with 9 items developed to assess disabling fatigue that has been used extensively in studies of chronic HCV infection. Item responses were measured on a 7point Likert scale ranging from strongly disagree (1 point) to strongly agree (7 points). The 9 items were averaged to produce a total score; a lower total score indicates less severe fatigue. FSS scores have a range from 1 to 7 where higher scores indicate more severe fatigue.

Measure: Change From Baseline in Fatigue Severity Scale (FSS) Score up to Follow-up Week 24

Time: Baseline (Day 1), Week 4, Week 8, Week 12, Follow-up Week 4, Follow-up Week 12 and Follow-up Week 24

Description: The CES-D scale assesses how often during the past week participants experienced 20 symptoms commonly associated with major depression. CES-D scores range from 0 (no symptoms) to 60 (all 20 symptoms most or all of the time during the past 5-7 days). The CES-D scores between 16 and 23 points indicate mild to moderate depressive illness while CES-D scores greater than or equal to 23 indicate probable major depressive illness.

Measure: Change From Baseline in Center for Epidemiologic Studies Depression Scale (CES-D) Scores

Time: Baseline (Day 1), Week 4, Week 8, Week 12, Follow-up Week 4, Follow-up Week 12 and Follow-up Week 24

Description: The EQ-5D questionnaire is a brief, generic health-related quality of life assessment (HRQOL) that can also be used to incorporate participant preferences into health economic evaluations. The EQ-5D questionnaire assesses HRQOL in terms of degree of limitation on 5 health dimensions (mobility, self-care, usual activities, pain/discomfort, anxiety/depression) and as overall health using a "thermometer" visual analog scale with response options ranging from 0 (worst imaginable health) to 100 (best imaginable health). Lower scores indicate worsening.

Measure: Change From Baseline in EuroQol 5 Dimension (EQ-5D) Visual Analogue Scale

Time: Baseline (Day 1), Week 4, Week 8, Week 12, Follow-up Week 4, Follow-up Week 12 and Follow-up Week 24

Purpose: Treatment

Allocation: Randomized

Parallel Assignment


There is one SNP

SNPs


1 Q80K

Lower scores indicate worsening.. Inclusion Criteria: - Hepatitis C virus (HCV) genotype 1a or 1b infection confirmed before randomization - Documentation of the presence or absence of a NS3 Q80K polymorphism in HCV genotype 1a infected participants before randomization - Documentation of the IL28B genotype before randomization - HCV ribonucleic acid level greater than 10,000 IU/mL at screening - Treatment-experienced participants must have at least 1 documented previous course of interferon-based regimen with or without ribavirin - Absence of cirrhosis in participants Exclusion Criteria: - Evidence of clinical hepatic decompensation (history or current evidence of ascites, bleeding varices or hepatic encephalopathy) - Infection/co-infection with HCV non-genotype 1a or 1b - Co-infection with human immunodeficiency virus (HIV) type 1 or type 2 (HIV-1 or HIV-2) (positive HIV-1 or HIV-2 antibodies test at screening) - Co-infection with hepatitis-B virus (hepatitis-B-surface-antigen positive) - Previously been treated with any direct acting anti-HCV agent (approved or investigational) for chronic HCV infection Inclusion Criteria: - Hepatitis C virus (HCV) genotype 1a or 1b infection confirmed before randomization - Documentation of the presence or absence of a NS3 Q80K polymorphism in HCV genotype 1a infected participants before randomization - Documentation of the IL28B genotype before randomization - HCV ribonucleic acid level greater than 10,000 IU/mL at screening - Treatment-experienced participants must have at least 1 documented previous course of interferon-based regimen with or without ribavirin - Absence of cirrhosis in participants Exclusion Criteria: - Evidence of clinical hepatic decompensation (history or current evidence of ascites, bleeding varices or hepatic encephalopathy) - Infection/co-infection with HCV non-genotype 1a or 1b - Co-infection with human immunodeficiency virus (HIV) type 1 or type 2 (HIV-1 or HIV-2) (positive HIV-1 or HIV-2 antibodies test at screening) - Co-infection with hepatitis-B virus (hepatitis-B-surface-antigen positive) - Previously been treated with any direct acting anti-HCV agent (approved or investigational) for chronic HCV infection Hepatitis C Virus Infection Infection Communicable Diseases Hepatitis Hepatitis A Hepatitis C Fibrosis Liver Cirrhosis Virus Diseases This is a randomized (the study medication is assigned by chance), open-label (all people know the identity of the intervention), multicenter study. --- Q80K ---

Lower scores indicate worsening.. Inclusion Criteria: - Hepatitis C virus (HCV) genotype 1a or 1b infection confirmed before randomization - Documentation of the presence or absence of a NS3 Q80K polymorphism in HCV genotype 1a infected participants before randomization - Documentation of the IL28B genotype before randomization - HCV ribonucleic acid level greater than 10,000 IU/mL at screening - Treatment-experienced participants must have at least 1 documented previous course of interferon-based regimen with or without ribavirin - Absence of cirrhosis in participants Exclusion Criteria: - Evidence of clinical hepatic decompensation (history or current evidence of ascites, bleeding varices or hepatic encephalopathy) - Infection/co-infection with HCV non-genotype 1a or 1b - Co-infection with human immunodeficiency virus (HIV) type 1 or type 2 (HIV-1 or HIV-2) (positive HIV-1 or HIV-2 antibodies test at screening) - Co-infection with hepatitis-B virus (hepatitis-B-surface-antigen positive) - Previously been treated with any direct acting anti-HCV agent (approved or investigational) for chronic HCV infection Inclusion Criteria: - Hepatitis C virus (HCV) genotype 1a or 1b infection confirmed before randomization - Documentation of the presence or absence of a NS3 Q80K polymorphism in HCV genotype 1a infected participants before randomization - Documentation of the IL28B genotype before randomization - HCV ribonucleic acid level greater than 10,000 IU/mL at screening - Treatment-experienced participants must have at least 1 documented previous course of interferon-based regimen with or without ribavirin - Absence of cirrhosis in participants Exclusion Criteria: - Evidence of clinical hepatic decompensation (history or current evidence of ascites, bleeding varices or hepatic encephalopathy) - Infection/co-infection with HCV non-genotype 1a or 1b - Co-infection with human immunodeficiency virus (HIV) type 1 or type 2 (HIV-1 or HIV-2) (positive HIV-1 or HIV-2 antibodies test at screening) - Co-infection with hepatitis-B virus (hepatitis-B-surface-antigen positive) - Previously been treated with any direct acting anti-HCV agent (approved or investigational) for chronic HCV infection Hepatitis C Virus Infection Infection Communicable Diseases Hepatitis Hepatitis A Hepatitis C Fibrosis Liver Cirrhosis Virus Diseases This is a randomized (the study medication is assigned by chance), open-label (all people know the identity of the intervention), multicenter study. --- Q80K --- --- Q80K ---



HPO Nodes


HPO:
Cirrhosis
Genes 119
HJV HFE MPV17 IL12A TMEM67 IL12RB1 TREX1 TCF4 KRT8 DCDC2 GLRX5 EOGT ATP6AP1 RPGRIP1L ATP7B GALT SPIB KRT18 USB1 PDGFRL RTEL1 DLL4 SFTPC CTC1 GPR35 MARS INPP5E AMACR FOS RRM2B POLG AGPAT2 AKR1D1 APC GBA PEX1 FARSB GBE1 CASP8 POU2AF1 IRF5 ATP8B1 CAV1 LBR APOE CCDC115 PPARG ACVRL1 WRAP53 SLC7A7 TYMP GDF2 NHP2 SKIV2L TERC TERT BCS1L F5 TFAM SLC40A1 IFT43 AXIN1 ABCB4 TFR2 JAK2 MST1 FAH MET PHKG2 HSD3B7 SERPINA1 LIPA AP1S1 NPHP3 IGF2R ABHD5 MMEL1 SFTPA2 PIGA ALMS1 TINF2 COG6 ARHGAP31 PIK3CA TTC37 DGUOK SLC25A13 JAG1 SCARB2 IL21R FECH RBPJ ASS1 ABCB11 DKC1 CC2D2A CYP7B1 PARN NOP10 CAVIN1 BSCL2 HAMP CTNNB1 UROD TRMT5 HBB DOCK6 ALDOB ENG TALDO1 SLC30A10 TNFSF15 TNPO3 COG4 NR1H4 NOTCH1 TP53 SMAD4 MPI
Hepatic fibrosis
Genes 103
HJV MKKS GPD1 NPHP1 IL12A RPGRIP1 TMEM67 IL12RB1 IFT27 TCF4 IFT140 DCDC2 ANKS6 EOGT RPGRIP1L OFD1 SPIB TRAF3IP1 WDR34 DLL4 DYNC2H1 GPR35 INPP5E IFT172 SDCCAG8 DZIP1L LZTFL1 CEP290 TMEM216 INSR DOLK SCYL1 GLIS3 BBIP1 FADD PEX1 BBS1 BBS2 WDR60 BBS4 POU2AF1 IRF5 BBS5 TMEM107 NHP2 NPHP4 BBS9 SLC40A1 WDPCP CEP164 MKS1 BBS10 ABCB4 CEP55 WDR19 ARL6 MST1 TTC8 MET B9D2 NEK1 LIPA AP1S1 NPHP3 MMEL1 PNPLA6 ARHGAP31 TRIM32 BBS7 AGL NEK8 ASL TTC37 DGUOK ALG9 IQCB1 RBPJ ABCD3 PKHD1 WDR35 PTRH2 B9D1 CC2D2A CYP7B1 NOP10 IFT122 IFT80 HAMP CTNNB1 C8ORF37 TMEM231 PLIN1 DOCK6 TALDO1 BBS12 CSPP1 TNFSF15 TNPO3 NOTCH1 INVS TCTN2 PMM2 MPI
Hepatitis
Genes 74
TTC7A MST1 TRAF3IP2 TPP2 TBX19 IL12A MET IL12RB1 RASGRP1 TCF4 HSD3B7 KRT8 SERPINA1 TCF3 VIPAS39 ATP7A IGF2R MMEL1 ATP7B ALMS1 SPIB KRT18 VPS33B CIITA PDGFRL PIK3CA GPR35 CYP7A1 GUSB PIK3R1 AMACR RFXANK SHPK IGHM PIEZO1 SLC25A15 BTK IL21R CD40LG BLNK GLIS3 APC CLEC7A AIRE LRRC8A CASP8 POU2AF1 XIAP CASP10 C1S CYP7B1 PRKCD CD79A CD79B IRF5 C4B IL17RC IL17RA IGLL1 CTNNB1 FAS SKIV2L FASLG SH2D1A RFX5 IL17F RFXAP TNFSF15 TNPO3 PGM1 STAT1 TP53 AXIN1 FOXP3