SNPMiner Trials: Clinical Trial Report
Report for Clinical Trial NCT00634673
 Developed by Shray Alag, 2019.
SNP Clinical Trial Gene 
      This study will be conducted in type 2 diabetic patient's to evaluate the if there is a
      different response of serum lipids after a standard meal (rich in saturated fatty acids) in
      patients who have the presence of a genetic alteration. This alteration that will be
      evaluated is a polymorphism, change of an amino acid in the gene of FABP2. This gene that can
      influence the absorption of lipids in the intestine and subjects who have the altered
      genotype (presence of T allele) can have an abnormal lipid profile as compared to subjects
      without this genotype.
    
Name: sandwich
Description: standard meal:sandwich (7.23 kcal/kg-total energy; 43.35% fat, 21.95% protein, and 34.70% carbohydrate)Type: Other
 TT  AA 
  Primary Outcomes 
 Measure: postprandial serum fatty acids
 Time: 0, 2, 4,6, and 8 hours after meal
  Secondary Outcomes 
 Measure: serum endothelin serum fibrinogen
 Time: 0 and 8 hours after meal
Allocation: Non-Randomized
Parallel Assignment 
There is one SNP
SNPs
1 A54T 
FABP2 Ala54Thr Genotype Influences the Postprandial Serum Fatty Acids Profile in Type 2 Diabetic Patients. --- Ala54Thr --- 
Inclusion Criteria:
          -  Type 2 diabetes
          -  homozygote to FABP2 polymorphism:TT or AA
        Exclusion Criteria:
          -  age >75 years
          -  glomerular filtration rate <30ml min-1
          -  with unstable angina or possible infarct or stroke in the last year
      
        Inclusion Criteria:
          -  Type 2 diabetes
          -  homozygote to FABP2 polymorphism:TT or AA
        Exclusion Criteria:
          -  age >75 years
          -  glomerular filtration rate <30ml min-1
          -  with unstable angina or possible infarct or stroke in the last year
      
Dyslipidemia
Type 2 Diabetes Mellitus
Diabetes Mellitus
Diabetes Mellitus, Type 2
Dyslipidemias
      Background: The presence of Ala54Thr polymorphism of intestinal fatty acid-binding protein 2
      gene (FABP2) might influence the intestinal absorption of dietary fatty acids (FAs) and has
      been associated with diabetic nephropathy. --- Ala54Thr --- 
Conclusion: The presence of the T allele of Ala54Thr
      polymorphism of FABP2 gene in type 2 diabetic patients increases absorption of dietary FAs,
      including the trans-unsaturated FAs, and this might turns these patients more susceptible to
      the effect of diet composition. --- Ala54Thr --- 
HPO Nodes
HPO:Abnormal circulating lipid concentration 
Genes 190
NPC1  GPD1  NPHS1  TBXAS1  PLA2G7  LDLRAP1  UBR1  IL12A  FLII  IL12RB1  HNF1A  PNPLA2  ABCA1  SLC29A3  SLC25A20  SETX  SLC52A1  PLVAP  DEAF1  ZMPSTE24  PNLIP  ACADL  SPIB  ACADM  NUP107  MYO5A  ACADVL  CLIP2  APOA5  CYP7A1  CETP  CYP11A1  ACAD9  POLD1  FOS  SYNE1  CYP19A1  NADK2  UBE3B  PEX3  APTX  IQSEC2  CYP27A1  AGPAT2  PSMB4  TMEM199  MC4R  PSMB8  PSMB9  PEX1  PEX6  BAZ1B  PEX7  PEX10  HMBS  PEX12  PEX13  POU2AF1  XIAP  PEX14  UNC13D  APOA1  IRF5  ACTN4  NPC2  APOB  HMGCL  TMEM43  APOC2  OCRL  APOC3  CAV1  LBR  CAV3  LCAT  APOE  CCDC115  PPARG  CPT1A  RFC2  XRCC4  PEX11B  SLC7A7  CPT2  GTF2IRD1  NSMCE2  HNF4A  TFG  TTPA  LDLR  AR  LEP  LEPR  ACOX2  PEX26  POLR3A  NSDHL  GHR  TRMU  PHKA2  PHKG2  HSD3B7  LIMK1  PHYH  NPHS2  LIPA  GK  LIPC  LIPE  FBN1  PANK2  GTF2I  ACAD8  ABHD5  MMEL1  GPIHBP1  GLA  SLC12A1  STXBP2  LMNA  ALMS1  PIGH  MSMO1  CCT5  SC5D  KCNJ1  SGPL1  PRF1  ABCC8  AGL  CIDEC  DHCR7  SLC25A13  JAG1  DHCR24  GYS2  KCNJ11  LPL  UCP2  SAR1B  SLC22A5  SYNE2  EBP  FECH  DYRK1B  PEX19  PEX16  ANGPTL3  DCAF17  MTTP  PEX2  PEX5  FLCN  DLD  TRNE  PYGL  AKT2  SMPD1  CAVIN1  BSCL2  ALB  ELN  TRNK  ABCD1  TRNL1  LTC4S  CTNS  HADH  EMD  TANGO2  TDP1  FHL1  PLIN1  STX11  G6PC  RSPO1  PIK3R5  TNFSF15  SLC37A4  TNPO3  COG4  TBL2  ABCG5  RAB27A  ABCG8  DGAT1  RAI1  PCSK9  CEP19  PMM2   hr>Diabetes mellitus 
Genes 326
SOX2  MKRN3  SOX3  MKKS  SNORD115-1  SPATA7  CDKN2A  HFE  CERKL  UBR1  PRPF31  LRAT  PRSS1  TREX1  PRSS2  IFT140  ARL2BP  GLRX5  SLC29A3  MAK  AHI1  ABCA4  PDE4D  ZBTB20  PDE6A  PDE6G  ZMPSTE24  IMPDH1  CEL  STUB1  SPINK1  RTEL1  PDE6B  LEMD3  INS  HLA-DQB1  GJB4  IFT172  AMACR  KIZ  CDHR1  HLA-DRB1  CYP19A1  CFTR  DHX38  MAFA  GAS1  INSR  ZFP57  MC4R  GATA3  CTRC  GATA6  PDX1  IPW  PEX1  BBS1  PWRN1  PEX6  BBS2  DNAJC21  PEX10  CDH23  SRP54  DHDDS  NDN  PRPF6  GCK  NDP  KCTD1  AGBL5  GPR101  PTCH1  HNF4A  ADAR  TTPA  TUB  SNORD116-1  HESX1  STAT1  STAT3  TULP1  BLK  BLM  ARL6  IFIH1  TTC8  GJA1  PROM1  NEK2  GJB3  SAG  FBN1  NEUROD1  SARS2  PNPLA6  BRCA1  ALMS1  BRAF  BRCA2  PROKR2  CLCNKB  TINF2  KLHL7  REEP6  FAM161A  PIK3R1  GLI2  ABCC8  KCNJ11  RNASEH2C  ARNT2  NPAP1  SCAPER  FSCN2  DCAF17  AHR  PRCD  DKC1  FGF8  PLAGL1  AKT2  NOP10  FGFR1  PLCD1  GNAS  PWAR1  SEMA4A  HERC2  MERTK  FOXH1  PLIN1  HYMAI  NODAL  USH2A  CLRN1  CNGB1  CNGA1  EIF2AK3  MOG  CDON  CA4  IMPG2  PDE11A  FOXP3  FOXC2  HJV  PROK2  RNASEH2B  KRAS  TCF4  KLF11  EFL1  HNF1A  BEST1  HNF1B  PNPLA2  NR2E3  MAGEL2  POC1A  OFD1  SLC25A4  USB1  NRL  CLIP2  APOA5  CISD2  RNASEH2A  CTC1  PTF1A  WFS1  GPR35  POLD1  FOS  RRM2B  POLG  AGPAT2  RBP3  WRN  SLC19A2  HGSNAT  GLIS3  SHH  AIRE  KIAA1549  FUZ  BAZ1B  RDH12  POMGNT1  PRPH2  ARHGEF18  DNM1L  CP  TWNK  CPA1  CASR  PCARE  SAMHD1  TDGF1  AIP  CAV1  PSTPIP1  FXN  APOE  IDH3B  PPARG  RFC2  XRCC4  WRAP53  SIX3  GTF2IRD1  NSMCE2  PRPF8  DLL1  NHP2  TERC  TERT  EDA  RGR  SLC7A14  AR  LEP  OPA1  LEPR  PALB2  POLR3A  RHO  CRB1  ZIC2  MKRN3-AS1  CRX  RLBP1  TTC7A  PPP1R3A  CNBP  MST1  ERGIC1  LHX1  TGIF1  USP8  MLXIPL  LIG4  LIMK1  EYS  ARL3  LIPE  OTX2  IGF1R  GTF2I  HMGA2  ATP6  TRNC  SLC12A3  LMNA  COX1  COX2  COX3  GUCA1B  IFT88  CYTB  SLC16A2  PRPF4  PRPF3  ELMO2  PDE8B  VANGL1  SBDS  EIF2S3  IER3IP1  ZNF408  CIDEC  ND1  ARMC5  ND4  ND5  ND6  PRKACA  PRKAR1A  NKX2-5  APPL1  TRNE  TRNF  ROM1  ZFYVE26  PARN  CAVIN1  BSCL2  TRNH  RP9  RP1  ELN  TRNK  PAX4  RP2  TRNL1  RPGR  ATM  HAMP  CTNS  CTNNB1  C8ORF37  TRNQ  TRNS1  TRNS2  POLG2  TRNV  TOPORS  TRNW  KDSR  HBB  SUFU  IL2RA  RPE65  DNAJC3  SNRNP200  SNRPN  PALLD  TBL2  DISP1  EDA2R  NEUROG3  TP53  CEP19  SMAD4  PCNT  ZNF513   hr>Type II diabetes mellitus 
Genes 152
MKRN3  SNORD115-1  SPATA7  CERKL  PRPF31  LRAT  KLF11  IFT140  HNF1A  BEST1  HNF1B  ARL2BP  NR2E3  GLRX5  MAK  AHI1  MAGEL2  ABCA4  PDE6A  PDE6G  IMPDH1  OFD1  STUB1  SPINK1  NRL  CLIP2  PDE6B  IFT172  AMACR  KIZ  CDHR1  CYP19A1  DHX38  INSR  RBP3  WRN  MC4R  HGSNAT  PDX1  IPW  KIAA1549  PWRN1  BBS2  BAZ1B  PEX10  RDH12  POMGNT1  PRPH2  DHDDS  ARHGEF18  PCARE  NDN  PRPF6  GCK  IDH3B  AGBL5  RFC2  XRCC4  GTF2IRD1  PRPF8  RGR  TUB  SLC7A14  AR  SNORD116-1  TULP1  POLR3A  RHO  CRB1  MKRN3-AS1  CRX  BLM  RLBP1  PPP1R3A  ARL6  TTC8  PROM1  LIG4  NEK2  LIMK1  EYS  ARL3  SAG  FBN1  GTF2I  PNPLA6  SLC12A3  LMNA  COX1  ALMS1  BRAF  COX2  COX3  GUCA1B  CLCNKB  IFT88  KLHL7  PRPF4  PRPF3  REEP6  FAM161A  ABCC8  ZNF408  ND1  ND4  ND5  ND6  NPAP1  SCAPER  FSCN2  AHR  PRCD  TRNE  TRNF  ROM1  AKT2  TRNH  RP9  PLCD1  RP1  ELN  TRNK  PAX4  RP2  TRNL1  RPGR  ATM  PWAR1  SEMA4A  CTNNB1  C8ORF37  HERC2  TRNQ  MERTK  TRNS1  TRNS2  TOPORS  TRNW  USH2A  RPE65  CLRN1  CNGB1  CNGA1  SNRNP200  SNRPN  TBL2  MOG  CEP19  CA4  IMPG2  PCNT  ZNF513   hr>