SNPMiner Trials by Shray Alag


SNPMiner Trials: Clinical Trial Report


Report for Clinical Trial NCT02689570

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

Relation of Visceral Fat and Associated Cytokines With Early Cardiovascular Complications in Type 1 Diabetes: the VISCERA Study

Objective: To investigate whether visceral adipose tissue (VAT) and its adipokines contribute to early signs of cardiovascular disease, meaning coronary artery calcifications (CAC) and diastolic dysfunction in type 1 diabetes (T1DM). Research Design & Methods: A cross-sectional study of T1DM patients without a history of cardiovascular disease. CAC and VAT are measured using a CT scan. CAC is scored using the Agatston method. Echocardiography is performed to assess contractile abnormalities. Serum levels of adipocytokines (adiponectin, leptin, IL-6 and TNF-a) are measured using ELISA assays.

NCT02689570 Type 1 Diabetes Coronary Artery Calcifications Diastolic Dysfunction
MeSH: Diabetes Mellitus Diabetes Mellitus, Type 1 Calcinosis Arteriosclerosis Coronary Artery Disease
HPO: Arteriosclerosis Calcinosis Coronary artery atherosclerosis Diabetes mellitus Type I diabetes mellitus

1 Interventions

Name: observational

Description: no interventions; observational study

Type: Other

type 1 diabetic patients


Primary Outcomes

Description: A 64-slice non-contrast multidetector CT scan of the coronary arteries was performed to measure coronary artery calcifications (CAC) (Lightspeed, VCT; General Electric Medical Systems, Waukesha, Wis, Milwaukee, USA). Scoring was done by one skilled radiologist (R. Salgado), who was blinded to the subjects case files. Typical imaging parameters were: tube voltage 100 kv; current intensity 310 mA; rotation time 500 ms; and detector collimation 64 x 0.625 mm. Scan data were reconstructed at 75% of the cardiac cycle after the QRS complex. The radiation dose for calcium scoring ranged at 1.3-1.7 mSv. CAC was quantified (Agatston score) by means of a dedicated software application (SmartScore, AW). The Agatston score is the product of CAC area times the density.

Measure: coronary artery calcifications

Time: once at the moment of inclusion of this cross-sectional, observational study

Secondary Outcomes

Description: Standard 2-dimensional and Doppler Echocardiography (iE-33 Philips, The Netherlands) was performed by a single cardiologist blinded to the clinical status of the study participants. Briefly, left ventricular function was assessed by the parasternal long axis M-mode and modified biplane Simpson method. Diastolic function was determined taking into account all the following parameters: mitral inflow, pulmonary vein inflow signal and mitral annular tissue Doppler (tD) velocities from end expiratory cycles

Measure: diastolic dysfunction

Time: once at the moment of inclusion of this cross-sectional, observational study

Time Perspective: Cross-Sectional

Cohort


There are 2 SNPs

SNPs


1 K1270A

Plasma Serum levels of creatinin, total cholesterol, HDL cholesterol and triglycerides are measured on a Vitros 750 XRC (Ortho Clinical Diagnostic, Johnson & Johnson, Buckinghamshire, UK) Dimension Vista 1500 System (Siemens Healthcare Diagnostics, Huizingen, Belgium) with reagents from the same manufacturer (REF K1270A for creatinin, REF K1027 for total cholesterol, REF K3048A for HDL-cholesterol, REF K2069 for triglycerides). --- K1270A ---


2 K3048A

Plasma Serum levels of creatinin, total cholesterol, HDL cholesterol and triglycerides are measured on a Vitros 750 XRC (Ortho Clinical Diagnostic, Johnson & Johnson, Buckinghamshire, UK) Dimension Vista 1500 System (Siemens Healthcare Diagnostics, Huizingen, Belgium) with reagents from the same manufacturer (REF K1270A for creatinin, REF K1027 for total cholesterol, REF K3048A for HDL-cholesterol, REF K2069 for triglycerides). --- K1270A --- --- K3048A ---



HPO Nodes


HPO:
Arteriosclerosis
Genes 71
NPC1 COL3A1 TGFB2 TGFB3 TGFBR1 LDLRAP1 TGFBR2 HGD TGFBR3 MFAP5 ANGPTL6 ABCA1 ERCC2 LIPA MYH11 LIPC HTRA1 ERCC3 ERCC4 FBN1 ERCC5 ZMPSTE24 CSF2RA MYLK CSF2RB GLB1 LMNA ALMS1 SC5D CYP7A1 LOX ENPP1 MAT2A FOS KCNJ5 ESR1 SMARCAL1 CYP27A1 ACTA2 AGPAT2 AGXT WRN ANTXR1 OAS1 APOA1 NPC2 SMPD1 APOB CAVIN1 BSCL2 ELN PRKG1 CAV1 LCAT APOE PPARG ENG TNXB SERPIND1 LDLR BANF1 ABCC6 ABCG5 ABCG8 GGCX NOTCH3 ZNF687 SMAD3 PCSK9 CEP19 FOXE3
Calcinosis
Genes 9
LMNA GEMIN4 SAMD9 GNAS LBR AGXT ZMPSTE24 CASR GALNT3
Coronary artery atherosclerosis
Genes 34
TGFB2 TGFB3 TGFBR1 LDLRAP1 TGFBR2 MFAP5 APOA1 APOB ABCA1 MYH11 ELN LIPC FBN1 PRKG1 APOE PPARG ZMPSTE24 MYLK LMNA CYP7A1 SERPIND1 LDLR LOX MAT2A ABCG5 ABCG8 KCNJ5 ESR1 ZNF687 SMAD3 PCSK9 CEP19 ACTA2 FOXE3
Diabetes mellitus
Genes 326
SOX2 MKRN3 SOX3 MKKS SNORD115-1 SPATA7 CDKN2A HFE CERKL UBR1 PRPF31 LRAT PRSS1 TREX1 PRSS2 IFT140 ARL2BP GLRX5 SLC29A3 MAK AHI1 ABCA4 PDE4D ZBTB20 PDE6A PDE6G ZMPSTE24 IMPDH1 CEL STUB1 SPINK1 RTEL1 PDE6B LEMD3 INS HLA-DQB1 GJB4 IFT172 AMACR KIZ CDHR1 HLA-DRB1 CYP19A1 CFTR DHX38 MAFA GAS1 INSR ZFP57 MC4R GATA3 CTRC GATA6 PDX1 IPW PEX1 BBS1 PWRN1 PEX6 BBS2 DNAJC21 PEX10 CDH23 SRP54 DHDDS NDN PRPF6 GCK NDP KCTD1 AGBL5 GPR101 PTCH1 HNF4A ADAR TTPA TUB SNORD116-1 HESX1 STAT1 STAT3 TULP1 BLK BLM ARL6 IFIH1 TTC8 GJA1 PROM1 NEK2 GJB3 SAG FBN1 NEUROD1 SARS2 PNPLA6 BRCA1 ALMS1 BRAF BRCA2 PROKR2 CLCNKB TINF2 KLHL7 REEP6 FAM161A PIK3R1 GLI2 ABCC8 KCNJ11 RNASEH2C ARNT2 NPAP1 SCAPER FSCN2 DCAF17 AHR PRCD DKC1 FGF8 PLAGL1 AKT2 NOP10 FGFR1 PLCD1 GNAS PWAR1 SEMA4A HERC2 MERTK FOXH1 PLIN1 HYMAI NODAL USH2A CLRN1 CNGB1 CNGA1 EIF2AK3 MOG CDON CA4 IMPG2 PDE11A FOXP3 FOXC2 HJV PROK2 RNASEH2B KRAS TCF4 KLF11 EFL1 HNF1A BEST1 HNF1B PNPLA2 NR2E3 MAGEL2 POC1A OFD1 SLC25A4 USB1 NRL CLIP2 APOA5 CISD2 RNASEH2A CTC1 PTF1A WFS1 GPR35 POLD1 FOS RRM2B POLG AGPAT2 RBP3 WRN SLC19A2 HGSNAT GLIS3 SHH AIRE KIAA1549 FUZ BAZ1B RDH12 POMGNT1 PRPH2 ARHGEF18 DNM1L CP TWNK CPA1 CASR PCARE SAMHD1 TDGF1 AIP CAV1 PSTPIP1 FXN APOE IDH3B PPARG RFC2 XRCC4 WRAP53 SIX3 GTF2IRD1 NSMCE2 PRPF8 DLL1 NHP2 TERC TERT EDA RGR SLC7A14 AR LEP OPA1 LEPR PALB2 POLR3A RHO CRB1 ZIC2 MKRN3-AS1 CRX RLBP1 TTC7A PPP1R3A CNBP MST1 ERGIC1 LHX1 TGIF1 USP8 MLXIPL LIG4 LIMK1 EYS ARL3 LIPE OTX2 IGF1R GTF2I HMGA2 ATP6 TRNC SLC12A3 LMNA COX1 COX2 COX3 GUCA1B IFT88 CYTB SLC16A2 PRPF4 PRPF3 ELMO2 PDE8B VANGL1 SBDS EIF2S3 IER3IP1 ZNF408 CIDEC ND1 ARMC5 ND4 ND5 ND6 PRKACA PRKAR1A NKX2-5 APPL1 TRNE TRNF ROM1 ZFYVE26 PARN CAVIN1 BSCL2 TRNH RP9 RP1 ELN TRNK PAX4 RP2 TRNL1 RPGR ATM HAMP CTNS CTNNB1 C8ORF37 TRNQ TRNS1 TRNS2 POLG2 TRNV TOPORS TRNW KDSR HBB SUFU IL2RA RPE65 DNAJC3 SNRNP200 SNRPN PALLD TBL2 DISP1 EDA2R NEUROG3 TP53 CEP19 SMAD4 PCNT ZNF513
Type I diabetes mellitus
Genes 39
TTC7A MST1 AIRE DNAJC21 SRP54 TRNE TCF4 TRNF EFL1 HNF1A TRNH TRNL1 KCTD1 PSTPIP1 TRNQ TRNS1 TRNS2 SLC12A3 COX1 STUB1 COX2 COX3 TRNW CLCNKB SLC16A2 EDA EIF2AK3 GPR35 DNAJC3 INS SBDS EDA2R NEUROG3 STAT1 ND1 ND4 ND5 ND6 FOXP3