SNPMiner Trials by Shray Alag


SNPMiner Trials: Mutation Report


Report for Mutation G71R

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

There are 2 clinical trials

Clinical Trials


1 A Phase I Clinical Trial to Investigate the Correlation Between UGT1A1 Genotype and Irinotecan (CPT-11) Pharmacokinetics and Toxicity in Cancer Patients

Phase I trial to study genetic testing and the effectiveness of irinotecan in treating patients who have solid tumors and lymphoma. Drugs used in chemotherapy use different ways to stop cancer cells from dividing so they stop growing or die. Genetic testing for a specific enzyme may help doctors determine whether side effects from or response to chemotherapy are related to a person's genetic makeup

NCT00003970 AIDS-related Peripheral/Systemic Lymphoma AIDS-related Primary CNS Lymphoma Anaplastic Large Cell Lymphoma Angioimmunoblastic T-cell Lymphoma Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue Intraocular Lymphoma Nodal Marginal Zone B-cell Lymphoma Primary Central Nervous System Non-Hodgkin Lymphoma Recurrent Adult Burkitt Lymphoma Recurrent Adult Diffuse Large Cell Lymphoma Recurrent Adult Diffuse Mixed Cell Lymphoma Recurrent Adult Diffuse Small Cleaved Cell Lymphoma Recurrent Adult Hodgkin Lymphoma Recurrent Adult Immunoblastic Large Cell Lymphoma Recurrent Adult Lymphoblastic Lymphoma Recurrent Adult T-cell Leukemia/Lymphoma Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma Recurrent Grade 1 Follicular Lymphoma Recurrent Grade 2 Follicular Lymphoma Recurrent Grade 3 Follicular Lymphoma Recurrent Mantle Cell Lymphoma Recurrent Marginal Zone Lymphoma Recurrent Mycosis Fungoides/Sezary Syndrome Recurrent Small Lymphocytic Lymphoma Small Intestine Lymphoma Splenic Marginal Zone Lymphoma Stage III Adult Burkitt Lymphoma Stage III Adult Diffuse Large Cell Lymphoma Stage III Adult Diffuse Mixed Cell Lymphoma Stage III Adult Diffuse Small Cleaved Cell Lymphoma Stage III Adult Hodgkin Lymphoma Stage III Adult Immunoblastic Large Cell Lymphoma Stage III Adult Lymphoblastic Lymphoma Stage III Adult T-cell Leukemia/Lymphoma Stage III Cutaneous T-cell Non-Hodgkin Lymphoma Stage III Grade 1 Follicular Lymphoma Stage III Grade 2 Follicular Lymphoma Stage III Grade 3 Follicular Lymphoma Stage III Mantle Cell Lymphoma Stage III Marginal Zone Lymphoma Stage III Mycosis Fungoides/Sezary Syndrome Stage III Small Lymphocytic Lymphoma Stage IV Adult Burkitt Lymphoma Stage IV Adult Diffuse Large Cell Lymphoma Stage IV Adult Diffuse Mixed Cell Lymphoma Stage IV Adult Diffuse Small Cleaved Cell Lymphoma Stage IV Adult Hodgkin Lymphoma Stage IV Adult Immunoblastic Large Cell Lymphoma Stage IV Adult Lymphoblastic Lymphoma Stage IV Adult T-cell Leukemia/Lymphoma Stage IV Cutaneous T-cell Non-Hodgkin Lymphoma Stage IV Grade 1 Follicular Lymphoma Stage IV Grade 2 Follicular Lymphoma Stage IV Grade 3 Follicular Lymphoma Stage IV Mantle Cell Lymphoma Stage IV Marginal Zone Lymphoma Stage IV Mycosis Fungoides/Sezary Syndrome Stage IV Small Lymphocytic Lymphoma Unspecified Adult Solid Tumor, Protocol Specific Drug: irinotecan hydrochloride
MeSH: Lymphoma Syndrome Leukemia Lymphoma, Follicular Lymphoma, Non-Hodgkin Lymphoma, B-Cell Hodgkin Disease Lymphoma, Mantle-Cell Lymphoma, B-Cell, Marginal Zone Leukemia, Lymphocytic, Chronic, B-Cell Precursor Cell Lymphoblastic Leukemia-Lymphoma Lymphoma, Large B-Cell, Diffuse Lymphoma, T-Cell Burkitt Lymphoma Lymphoma, Large-Cell, Immunoblastic Plasmablastic Lymphoma Mycoses Mycosis Fungoides Sezary Syndrome Lymphoma, T-Cell, Cutaneous Leukemia, T-Cell Leukemia-Lymphoma, Adult T-Cell Lymphoma, Large-Cell, Anaplastic Immunoblastic Lymphadenopathy Intraocular Lymphoma
HPO: Anaplastic large-cell lymphoma B-cell lymphoma Burkitt lymphoma Chronic lymphatic leukemia Cutaneous T-cell lymphoma Hodgkin lymphoma Leukemia Lymphoma Non-Hodgkin lymphoma T-cell lymphoma

Inclusion Criteria: - Histologically proven solid tumor or lymphoma - Responded to irinotecan OR no existing curative therapy - No leukemia - Measurable or evaluable disease - Performance status - Karnofsky 70-100% - WBC at least 3500/mm^3 - Absolute neutrophil count at least 1500/mm^3 - Platelet count at least 100,000/mm^3 - Bilirubin normal - SGOT/SGPT less than 5 times upper limit of normal (unless due to disease) - Creatinine no greater than 1.5 mg/dL - Creatinine clearance at least 60 mL/min - Not pregnant or nursing - Fertile patients must use effective contraception - No inflammatory bowel disease requiring therapy - No chronic diarrhea syndrome or paralytic ileus - At least 2 weeks since prior colony stimulating factor - At least 4 weeks since prior biologic therapy - No concurrent biologic therapy - See Disease Characteristics - At least 4 weeks since prior chemotherapy (6 weeks for nitrosoureas or mitomycin) - No other concurrent chemotherapy - At least 4 weeks since prior radiotherapy to greater than 25% of bone marrow - No concurrent palliative radiotherapy - No prior transplant - No concurrent substrates of UGT1A1 enzyme - No concurrent inducers or inhibitors of UGT1A1 enzyme activity Inclusion Criteria: - Histologically proven solid tumor or lymphoma - Responded to irinotecan OR no existing curative therapy - No leukemia - Measurable or evaluable disease - Performance status - Karnofsky 70-100% - WBC at least 3500/mm^3 - Absolute neutrophil count at least 1500/mm^3 - Platelet count at least 100,000/mm^3 - Bilirubin normal - SGOT/SGPT less than 5 times upper limit of normal (unless due to disease) - Creatinine no greater than 1.5 mg/dL - Creatinine clearance at least 60 mL/min - Not pregnant or nursing - Fertile patients must use effective contraception - No inflammatory bowel disease requiring therapy - No chronic diarrhea syndrome or paralytic ileus - At least 2 weeks since prior colony stimulating factor - At least 4 weeks since prior biologic therapy - No concurrent biologic therapy - See Disease Characteristics - At least 4 weeks since prior chemotherapy (6 weeks for nitrosoureas or mitomycin) - No other concurrent chemotherapy - At least 4 weeks since prior radiotherapy to greater than 25% of bone marrow - No concurrent palliative radiotherapy - No prior transplant - No concurrent substrates of UGT1A1 enzyme - No concurrent inducers or inhibitors of UGT1A1 enzyme activity AIDS-related Peripheral/Systemic Lymphoma AIDS-related Primary CNS Lymphoma Anaplastic Large Cell Lymphoma Angioimmunoblastic T-cell Lymphoma Extranodal Marginal Zone B-cell Lymphoma of Mucosa-associated Lymphoid Tissue Intraocular Lymphoma Nodal Marginal Zone B-cell Lymphoma Primary Central Nervous System Non-Hodgkin Lymphoma Recurrent Adult Burkitt Lymphoma Recurrent Adult Diffuse Large Cell Lymphoma Recurrent Adult Diffuse Mixed Cell Lymphoma Recurrent Adult Diffuse Small Cleaved Cell Lymphoma Recurrent Adult Hodgkin Lymphoma Recurrent Adult Immunoblastic Large Cell Lymphoma Recurrent Adult Lymphoblastic Lymphoma Recurrent Adult T-cell Leukemia/Lymphoma Recurrent Cutaneous T-cell Non-Hodgkin Lymphoma Recurrent Grade 1 Follicular Lymphoma Recurrent Grade 2 Follicular Lymphoma Recurrent Grade 3 Follicular Lymphoma Recurrent Mantle Cell Lymphoma Recurrent Marginal Zone Lymphoma Recurrent Mycosis Fungoides/Sezary Syndrome Recurrent Small Lymphocytic Lymphoma Small Intestine Lymphoma Splenic Marginal Zone Lymphoma Stage III Adult Burkitt Lymphoma Stage III Adult Diffuse Large Cell Lymphoma Stage III Adult Diffuse Mixed Cell Lymphoma Stage III Adult Diffuse Small Cleaved Cell Lymphoma Stage III Adult Hodgkin Lymphoma Stage III Adult Immunoblastic Large Cell Lymphoma Stage III Adult Lymphoblastic Lymphoma Stage III Adult T-cell Leukemia/Lymphoma Stage III Cutaneous T-cell Non-Hodgkin Lymphoma Stage III Grade 1 Follicular Lymphoma Stage III Grade 2 Follicular Lymphoma Stage III Grade 3 Follicular Lymphoma Stage III Mantle Cell Lymphoma Stage III Marginal Zone Lymphoma Stage III Mycosis Fungoides/Sezary Syndrome Stage III Small Lymphocytic Lymphoma Stage IV Adult Burkitt Lymphoma Stage IV Adult Diffuse Large Cell Lymphoma Stage IV Adult Diffuse Mixed Cell Lymphoma Stage IV Adult Diffuse Small Cleaved Cell Lymphoma Stage IV Adult Hodgkin Lymphoma Stage IV Adult Immunoblastic Large Cell Lymphoma Stage IV Adult Lymphoblastic Lymphoma Stage IV Adult T-cell Leukemia/Lymphoma Stage IV Cutaneous T-cell Non-Hodgkin Lymphoma Stage IV Grade 1 Follicular Lymphoma Stage IV Grade 2 Follicular Lymphoma Stage IV Grade 3 Follicular Lymphoma Stage IV Mantle Cell Lymphoma Stage IV Marginal Zone Lymphoma Stage IV Mycosis Fungoides/Sezary Syndrome Stage IV Small Lymphocytic Lymphoma Unspecified Adult Solid Tumor, Protocol Specific Lymphoma Syndrome Leukemia Lymphoma, Follicular Lymphoma, Non-Hodgkin Lymphoma, B-Cell Hodgkin Disease Lymphoma, Mantle-Cell Lymphoma, B-Cell, Marginal Zone Leukemia, Lymphocytic, Chronic, B-Cell Precursor Cell Lymphoblastic Leukemia-Lymphoma Lymphoma, Large B-Cell, Diffuse Lymphoma, T-Cell Burkitt Lymphoma Lymphoma, Large-Cell, Immunoblastic Plasmablastic Lymphoma Mycoses Mycosis Fungoides Sezary Syndrome Lymphoma, T-Cell, Cutaneous Leukemia, T-Cell Leukemia-Lymphoma, Adult T-Cell Lymphoma, Large-Cell, Anaplastic Immunoblastic Lymphadenopathy Intraocular Lymphoma OBJECTIVES: I. Classify patients with solid tumors or lymphoma according to UGT1A1 promoter (TATA box) and coding region (Gly71Arg) mutation, and CYP3A4 promoter (G to A) polymorphisms. --- Gly71Arg ---

The DNA is analyzed for the UGT1A1 coding region mutation (Gly71Arg) and CYP3A4 promoter polymorphism. --- Gly71Arg ---

Primary Outcomes

Description: A Cochran-Armitage test for trend will be used to determine whether there is a linear trend in the proportion of patients within each genotype experiencing grade 3-4 diarrhea. Similarly, trend analysis will be performed to determine if there is a linear trend in the proportion of patients within each phenotype experiencing grade 3-4 myelosuppression. Genotype (3 ordered levels) will be modeled as a function of metabolic ratios and biliary index to determine whether these are independent.

Measure: Grade 3-4 diarrhea

Time: Up to 4 years

Secondary Outcomes

Description: A chi-squared test will be used to determine whether genotype and phenotype are independent.

Measure: Genotype

Time: Up to 4 years

Description: A chi-squared test will be used to determine whether genotype and phenotype are independent. Modeled as a function of metabolic ratios and biliary index.

Measure: Phenotype

Time: Up to 4 years

2 Establishing Novel Detection Techniques for Various Genetic-Related Diseases by Applying DHPLC Platform.

In this, here we want to present a new method for analysis variation in gene copy number for patients and carriers of SMA. This is a relative quantitation method and, therefore, relies on the inclusion of one or more internal control or reference sequences; quantitation of DNA is relative to this reference sequence of known copy number. A peak height from within a potentially duplicated or deleted target region is amplified simultaneously with a disomic reference region in a multiplex PCR system.

NCT00154960 Spinal Muscular Atrophy Neonatal Hyperbilirubinemia Colon Cancer
MeSH: Atrophy Muscular Atrophy Muscular Atrophy, Spinal Hyperbilirubinemia Hyperbilirubinemia, Neonatal
HPO: Neonatal hyperbilirubinemia Skeletal muscle atrophy Spinal muscular atrophy

The high allele-frequency of Gly71Arg and promoter polymorphism in UGT1A1 gene was found to be responsible for neonatal hyperbilirubinemia without obvious cause. --- Gly71Arg ---



HPO Nodes


Skeletal muscle atrophy
Genes 453
VAPB TPM2 HEXB TPM3 MKKS MAG SDHAF1 AARS ERBB3 ERBB4 ABCA1 PNKP B4GALT7 HINT1 STUB1 ACADSB SIGMAR1 LEMD3 PYROXD1 DNAJC19 KDM5C SPEG RPS6KA3 ACTA1 ACTB GDAP1 SCYL1 SLC5A7 WDR81 PEX6 PEX7 PEX10 EXOSC8 CHAT ANO5 AK9 KLHL41 RXYLT1 PFKM MDH2 PFN1 DYSF CHN1 COLQ TFG PLEKHG5 TTN HNRNPA1 TTPA MECP2 TRIP4 HNRNPA2B1 RTN2 CHRNA1 ARSI WARS2 CHRNB1 SLC39A13 RYR1 CHRND CHRNE CHRNG PRUNE1 ADK ARL6 PHKA1 TTC8 PNPT1 PHYH UBA1 NDRG1 ADSL NALCN ATXN1 ATXN2 FKTN CPT1C PIK3R2 AGL PGAP1 SCN4A ATXN3 RETREG1 SCN9A CYP7B1 MME FLRT1 CEP126 PLEC PYCR2 FHL1 POMK DNAJB2 GMPPB DHTKD1 LTBP4 PLP1 SLC9A6 HSPB1 SDHA SDHB VCP SDHD COL2A1 PMP22 CUL4B COL4A1 POMT2 MPZ MRE11 COL6A1 HSPG2 COL6A2 FLNA TRAPPC11 VLDLR COL6A3 FLNC AMPD2 PSAT1 BIN1 VRK1 FBLN5 COL12A1 COL13A1 UBQLN2 ANG MYOT NOP56 SLC25A4 FKRP SGCA SGCB LITAF SGCD SGCG KLHL40 RRM2B POLG FLVCR1 ANXA11 B3GALNT2 LZTFL1 CEP290 CNTNAP1 BAG3 SPTLC1 WRN BBIP1 PON1 PON2 KLC2 PHF6 PON3 POMGNT1 ALS2 SPG11 DUX4 TMEM43 POMT1 FXN CCDC115 CPT1A GBA2 TCAP AR PRX YARS ERLIN1 CHMP2B LIMS2 JPH1 SPTBN4 MST1 IFRD1 PIEZO2 MTAP ATP8 COX1 COX2 COX3 CCT5 SLC16A2 TRIM32 ASAH1 FARS2 SLC18A3 PDE8B SLC25A1 FRG1 IGHMBP2 MTM1 TBK1 C12ORF65 ND1 ND4 ND5 ND6 PRKACA PRKAR1A PUS1 KBTBD13 TRNE TRNF SMN1 NDUFAF6 TRNH CTLA4 TRNL1 ATM NGLY1 SNAP25 CTNS FUS COASY TRNQ TBC1D23 TRNS1 TRNS2 C9ORF72 TDP1 RNASEH1 TRNW BBS12 ABHD12 MUSK UNC13A SOD1 MGME1 MYBPC1 KIF1C PRPH PRPS1 SOX10 IBA57 MYH7 CHCHD10 B4GALNT1 SETX ZBTB20 ATP7A SPAST DCAF8 REEP1 KIF1A NDE1 MYO9A MYOD1 IFT172 SEPTIN9 ATP8A2 INPP5K MATR3 SDCCAG8 LRSAM1 KIF1B APTX GARS STAC3 INSR NAGA MAP3K20 PSMB8 DAG1 BBS1 BBS2 SPART GBE1 BBS4 DAO NBN TUBB2B SLC46A1 MCCC2 PLXND1 COL25A1 ITGA7 NEB NDUFA9 PTEN SUCLG1 ZC4H2 SUCLA2 WNK1 DCTN1 BBS9 GFPT1 PHGDH NDUFS4 TTC19 MKS1 FBXL4 FAM111B SLC52A3 STIM1 NEFH FBXO38 BMP1 DES PPARGC1A NEFL NEK1 GJB1 NEU1 KLHL9 PNPLA6 ANTXR2 DHH NDUFA12 GLB1 SACS FIG4 WASHC5 FGD4 GLE1 SQSTM1 SURF1 DGUOK C19ORF12 MYPN SYNE2 AFG3L2 VAMP1 FAM126A VPS13A MTMR2 MYMK PEX5 MFN2 RAB7A ALDH18A1 AP1S2 MAFB KIF5A NIPA1 GNAS DMD SLC52A2 DMPK CPLANE1 DNA2 HSPB8 DYNC1H1 CFAP410 AGTPBP1 TBCD DNM2 FKBP14 TBCE PDE11A CA8 ADSSL1 HNRNPDL NPHP1 BICD2 SLC12A6 SFXN4 IFT27 SCO2 SH3TC2 TCF4 PNPLA2 VMA21 PLOD3 RAPSN HSPB3 B4GAT1 GNE GPR35 COG7 SYNE1 SMCHD1 DOK7 CAPN1 CAPN3 NUP88 ASCC1 EXOSC3 LAMB2 B3GALT6 CRPPA DNM1L LAMP2 LMNB2 SYT2 AIP BBS5 CAV3 RBM28 REV3L SLC7A7 TYMP PIP5K1C SELENON OGDH OPA1 WDPCP MSTO1 NARS2 DARS2 ATL1 SIL1 POLR3A YARS2 BBS10 TGFB1 CCNF ERGIC1 KY TARDBP LMOD3 USP8 LDB3 VPS13D OPTN ERLIN2 HMGA2 POMGNT2 LMNA TIA1 EGR2 INF2 MYH14 ATAD3A AIFM1 CD28 BBS7 TK2 GYG1 SBF2 ENTPD1 MED25 TREM2 CD59 LRP4 GAN TRPV4 ZFYVE26 BSCL2 TAF15 EMD C8ORF37 HARS SPRTN TNFRSF1B SLC25A19 TNNT1 AGRN TNXB SLC33A1 EPHA4 LARGE1 TPI1
Neonatal hyperbilirubinemia
Genes 8
UGT1A1 EPB41 GYPC SPTA1 SPTB IGF1 FBP1 GPX1
Non-Hodgkin lymphoma
Genes 22
MYC FAS ADA FASLG IGH KIT BIRC3 CASP10 NBN CD28 MALT1 PRKCD RASGRP1 FOXP1 PIK3R1 NTHL1 POLE CCND1 BCL10 CTLA4 ATM TNFRSF1B
Chronic lymphatic leukemia
Genes 8
SAMHD1 RNASEH2B ADAR RNASEH2A IFIH1 RNASEH2C TREX1 PIK3R1
Leukemia
Genes 125
MPL RNASEH2B KRAS NPM1 TET2 MYD88 TSR2 RPL26 RPL27 TREX1 EFL1 PIGL SCN11A FLT3 PMS2 RPL35A EVC2 ABL1 CEBPA RARA NRAS WAS WIPF1 ATRX SH2B3 PDGFRA RB1 RNASEH2A PDGFRB CALR ARHGAP26 SH3GL1 RPS7 RPS10 NUMA1 GATA1 GATA2 RPS15A APC NSD1 ETV6 TCIRG1 DNAJC21 EVC SRP54 RPS17 NBN RPS19 SAMHD1 MSH2 RPS24 NUP214 RPS26 RPS27 RPS28 RPS29 MLLT10 RUNX1 XRCC4 CBFB CBL BCR ADAR TRIP13 ADA2 NSUN2 CREBBP PICALM GFI1 F13A1 F13B FANCA FANCC BLM FANCD2 FANCE NUTM1 JAK2 IFIH1 TYROBP MSH6 FANCG LIG4 PTPN11 SAMD9L THPO NF1 STS PIGA BRCA2 DYNC2LI1 PIK3CA SBDS GLI1 PIK3R1 BRD4 SETBP1 RNASEH2C LPP BUB1 BUB1B SCN9A SCN10A TREM2 MLF1 MLH1 ELANE DKC1 ATM HAX1 RPL35 GNB1 BUB3 CEP57 TAL1 KIT TAL2 RPL5 EP300 TP53 RPL11 KIF11 RPL15 DNMT3A RPL18
Hodgkin lymphoma
Genes 12
POLE FAS FASLG AAGAB ATM DKC1 CASP10 PRKCD RASGRP1 TCF4 COL14A1 RNF43
Anaplastic large-cell lymphoma
T-cell lymphoma
Genes 10
POLE FAS FASLG CTLA4 CASP10 NBN CD28 PRKCD RASGRP1 TNFRSF1B
B-cell lymphoma
Genes 15
FAS ADA FASLG IGH BIRC3 CASP10 NBN MALT1 PRKCD RASGRP1 FOXP1 PIK3R1 CCND1 BCL10 ATM
Cutaneous T-cell lymphoma
Genes 3
CTLA4 CD28 TNFRSF1B
Spinal muscular atrophy
Genes 20
ASCC1 VAPB BICD2 DNAJB2 SIGMAR1 FBXO38 PLEKHG5 ASAH1 EXOSC8 TK2 TRIP4 TRPV4 SMN1 DYNC1H1 CHCHD10 VRK1 IGHMBP2 UBA1 TBCE ATP7A
Burkitt lymphoma
Genes 6
MYC FAS FASLG CASP10 PRKCD RASGRP1
Lymphoma
Genes 94
BLM MYC CDKN2A KRAS MYD88 RMRP RAG1 RAG2 MALT1 MSH6 RASGRP1 LIG4 TCF4 PMS2 ICOS NRAS WAS WIPF1 CD19 MS4A1 USB1 IGH TINF2 RB1 DCLRE1C TNFSF12 RTEL1 CTC1 CD27 CD28 PIK3R1 PRF1 NTHL1 TP63 POLE HLA-DRB1 NFKB1 NFKB2 RECQL4 RAD54B CHEK2 TNFRSF13C APC MLH1 TNFRSF13B DKC1 BIRC3 XIAP CASP10 NBN PRKCD COL14A1 FOXP1 CD81 PARN NOP10 CCND1 BCL10 BCL2 MSH2 CHD7 CTLA4 ATM BCL6 MAGT1 RUNX1 TNFRSF1B XRCC4 WRAP53 PTEN MDM2 FAS NHP2 ADA FASLG CR2 SH2D1A TERC AAGAB KIT TERT NSUN2 IL2RG LYST RNF43 ZAP70 DNASE1L3 TP53 RAD54L ITK STAT3 IL7R KIF11 PNP