SNPMiner Trials by Shray Alag


SNPMiner Trials: Mutation Report


Report for Mutation A3243G

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

There are 6 clinical trials

Clinical Trials


1 A Randomized, Double-Blind, Placebo-Controlled, Single Ascending Dose Study to Assess the Safety, Tolerability, and Pharmacokinetics of ME1100 Inhalation Solution (Arbekacin Inhalation Solution) Administered to Healthy Volunteers

This is a single-center, randomized, double-blind, placebo-controlled, sequential group study. The primary objective of this study is to assess the tolerability and safety of single doses of ME1100 inhalation solution (orally inhaled arbekacin). The secondary objective is to determine the systemic exposure to, and urinary elimination of, ME1100.

NCT01907776 Healthy Drug: ME1100 inhalation solution Drug: ME1100 placebo inhalation solution

heteroplasmy) suggestive of increased risk of hearing loss (MT-RNR1 [A1555G] for mitochondrial 12S ribosomal RNA gene or MT-TS1 [A3243G] for mitochondrial transfer RNA serine 1) - History of parent, sibling or parental sibling reporting hearing loss before age 65 years - History of malignancy - History of clinically significant alcohol or drug abuse - History within last 6 months or current use of any tobacco product including e-cigarettes - Positive drug screen for drugs of abuse - Positive test for HIV, Hepatitis B or Hepatitis C - Use of any prescription or over-the-counter medications (except oral or hormonal contraceptives), herbal supplements, or vitamins within 14 days of Visit 2 - Known hypersensitivity to any aminoglycoside or bacitracin antibiotic - Female of childbearing potential with a positive urine pregnancy test, or currently breast feeding. --- A1555G --- --- A3243G ---

Primary Outcomes

Measure: Number of participants with adverse events

Time: from Baseline to Day 8-10

Measure: Number of participants with abnormal physical examinations

Time: from Baseline to Day 8-10

Measure: Number of participants with abnormal 12-lead electrocardiograms

Time: from Baseline to Day 8-10

Measure: Number of participants with abnormal vital signs

Time: from Baseline to Day 8-10

Measure: Number of participants with abnormal safety laboratory measurements

Time: from Baseline to Day 8-10

Secondary Outcomes

Measure: Serum Concentration of ME1100

Time: 5, 15, 30 minutes and 1, 2, 3, 4, 6, 8, 12, 18 and 24 hours post START of dosing

Measure: Urinary elimination of ME1100

Time: 0-6, 6-12, 12-24, 24-48 and 48-72 hours after single dosing

2 An Open-label, Single Dose Study to Assess Intrapulmonary Pharmacokinetics of ME1100 Inhalation Solution Administered to Healthy Volunteers

This is a single-center, open-label, single-dose study. The primary objective is to determine Epithelial Lining Fluid (ELF) levels of ME1100 after a single orally inhaled dose. The secondary objectives are to determine systemic exposure to inhaled ME1100 and to assess tolerability and safety of a single dose of ME1100 inhalation solution.

NCT01961830 Healthy Drug: ME1100 inhalation solution

heteroplasmy) suggestive of increased risk of hearing loss (MT-RNR1 [A1555G] for mitochondrial 12S ribosomal RNA gene or MT-TS1 [A3243G] for mitochondrial transfer RNA serine 1) - History of parent, sibling or parental sibling reporting hearing loss before age 65 years - History of malignancy - History of clinically significant alcohol or drug abuse - History within last 6 months or current use of any tobacco products including e-cigarettes. --- A1555G --- --- A3243G ---

Primary Outcomes

Description: Each subject will undergo fiber-optic bronchoscopy for the collection of bronchoalveolar lavage fluid at one of the following time points:5 minutes after END of dosing, 0.5, 1, 3, 6 and 12 hrs post START of dosing.

Measure: Pharmacokinetics profile in ELF

Time: 0-12 hours after START of Dosing

Secondary Outcomes

Measure: Serum Concentration of ME1100

Time: 2, 5, 10 minutes after END of dosing, 0.5, 1, 3, 6 and 12 hrs post START of dosing

Measure: Number of participants with abnormal safety laboratory measurements

Time: from Baseline to Day 3

3 Investigation of Clinical Syndromes Associated With mtDNA Point Mutations: MELAS/DCA Clinical Trial

Patients with the MELAS syndrome experience devastating mental impairment. This study will evaluate the effectiveness of the drug dichloroacetate (DCA) to reduce the symptoms of MELAS.

NCT00068913 MELAS Syndrome Drug: Dichloroacetate
MeSH: Syndrome MELAS Syndrome

Inclusion Criteria - A3243G mtDNA point mutation or maternally related to someone who has the mutation - Symptomatic with MELAS, including previous seizure or stroke - Certain laboratory values - Ability to comply with the study protocol Inclusion Criteria - A3243G mtDNA point mutation or maternally related to someone who has the mutation - Symptomatic with MELAS, including previous seizure or stroke - Certain laboratory values - Ability to comply with the study protocol MELAS Syndrome Syndrome MELAS Syndrome Although many organ systems are affected by mitochondrial (mt) DNA point mutations, the nervous system is particularly vulnerable. --- A3243G ---

Inclusion Criteria - A3243G mtDNA point mutation or maternally related to someone who has the mutation - Symptomatic with MELAS, including previous seizure or stroke - Certain laboratory values - Ability to comply with the study protocol Inclusion Criteria - A3243G mtDNA point mutation or maternally related to someone who has the mutation - Symptomatic with MELAS, including previous seizure or stroke - Certain laboratory values - Ability to comply with the study protocol MELAS Syndrome Syndrome MELAS Syndrome Although many organ systems are affected by mitochondrial (mt) DNA point mutations, the nervous system is particularly vulnerable. --- A3243G --- --- A3243G ---

Patients with MELAS (mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes) syndrome have the A3243G point mutation and elevated brain lactate levels. --- A3243G ---

Patients with the A3243G mitochondrial mutation and who have had either a stroke or a seizure will be enrolled in this study. --- A3243G ---


4 Pilot Study to Investigate the Efficacy of L-arginine Therapy on Endothelium-dependent Vasodilation & Mitochondrial Metabolism in MELAS Syndrome.

MELAS patients suffer from exercise intolerance, weakness, poor vision or blindness, poor growth, developmental delay, and deafness. They also have unique 'stroke-like' episodes (SLEs) which are not due to blockages of large or medium arteries. These 'strokes' are thought to be due to energy failure of very small brain blood vessels combined with energy failure in the mitochondria (cell battery) of the brain cells, especially in the back region of the brain in the vision centre. This leads to visual loss and paralysis. The overall goal of this study is to better understand the mechanism of these SLEs at the level of the brain cells and small blood vessels.

NCT01603446 MELAS Syndrome Drug: L-Arginine
MeSH: Syndrome MELAS Syndrome

Inclusion Criteria: Experimental Siblings with MELAS (A3243G) syndrome - 17-23 years - Followed Neurometabolic Clinic at the Hospital for Sick Children will be studied. --- A3243G ---

Primary Outcomes

Description: We will study exercising quadriceps using our MR-compatible up-down ergometer and our well established aerobic exercise protocol at 65 % of maximal voluntary contraction.

Measure: Muscle function investigation via 31P-Magnetic resonance spectroscopy

Time: 60 to 105 minutes post dose

Secondary Outcomes

Description: Maximal incremental cycle ergometry is conducted in our CardioRespiratory Exercise Lab at HSC by our established protocols (26). Serum CK and quantitative AA (for arginine, ornithine and citrulline) will be measured pre- and post- exercise as well as eNO in order to correlate aerobic exercise parameters with serum arg and eNO levels..

Measure: Total body maximal aerobic capacity

Time: 60-75 mins post dose

Description: Functional MRI-Blood oxygen level dependent (BOLD) of brain

Measure: CerebroVascular Reactivity

Time: 75-105 mins post dose

Description: eNO will be measured using single breath on-line measurements for the assessment of lower airway Nitric Oxide

Measure: Exhaled Nitric Oxide (eNO)

Time: 75 mins pre dose, 75 mins post dose

5 A Phase 2a, Double Blind, Randomized, Placebo-controlled, 28 Day, Two-arm, Parallel Group Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation and Evidence of Impaired Mitochondrial Function

This is a phase 2a, double-blind, placebo-controlled, single-center study. Twenty-one patients who qualify for the study will be randomly assigned to either active drug or placebo. The study will take place at Newcastle University. Patients will have a 66% chance of getting active drug. Patients will be required to take study treatment orally twice a day for 28 days. A baseline visit will occur within 21 days of screening visit. All patients will be followed for 1 week after completion of study or early withdrawal from the study.

NCT01074359 Neuromuscular Disease Drug: A0001 (alpha-tocopherolquinone) Drug: Placebo
MeSH: Neuromuscular Diseases

A Phase 2a, Double Blind, Randomized, Placebo-controlled, 28 Day, Two-arm, Parallel Group Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation and Evidence of Impaired Mitochondrial Function. --- A3243G ---

Safety and Efficacy Study of A0001 in Patients With the A3243G Mitochondrial DNA Point Mutation This is a phase 2a, double-blind, placebo-controlled, single-center study. --- A3243G ---

Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Neuromuscular Disease Neuromuscular Diseases null --- A3243G ---

Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Neuromuscular Disease Neuromuscular Diseases null --- A3243G --- --- A3243G ---

Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Neuromuscular Disease Neuromuscular Diseases null --- A3243G --- --- A3243G --- --- A3243G ---

Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Inclusion Criteria: - Diagnosis of neuromuscular symptoms due to the A3243G mitochondrial DNA point mutation - PCR/ATP ratio of <1.9 following the Cardiac MRS at screening Exclusion Criteria: - Any major illness not due to the A3243G mitochondrial DNA point mutation in the past three months or any significant ongoing chronic medical illness, especially significant central nervous neurological disease limiting capacity to carry out the study - Use of any investigational product within the past 30 days Neuromuscular Disease Neuromuscular Diseases null --- A3243G --- --- A3243G --- --- A3243G --- --- A3243G ---

Primary Outcomes

Measure: Improvement in the rate of ATP recovery ("Vmax") in cardiac muscle as measured by 31Phosphorous Magnetic Resonance Spectroscopy (31P-MRS)

Time: Baseline and Day 28

Secondary Outcomes

Measure: Improvement in cardiac structure and function as measured by Magnetic Resonance Imaging (MRI)

Time: Baseline and Day 28

Measure: Exercise tolerance as measured by a 6 minute walk test

Time: Baseline, Day 14 and Day 28

Measure: Improvement in the rate of Maximal ATP recovery (Vmax) as measured by 31Phosphorous Magnetic Resonance Spectroscopy (31P-MRS) MRI of calf muscle during a standardized isolated calf muscle procedure of 2 bouts of plantar flexion exercise

Time: Baseline and Day 28

Measure: Fasting blood lactate, fasting blood glucose, fasting blood insulin , fasting blood HbA1c levels

Time: Baseline, Day 14 and Day 28

Measure: Mitochondrial disease severity (NMDAS)

Time: Baseline and Day 28

Measure: Quality of life (SF-36® Health Survey Questionnaire)

Time: Baseline and Day 28

Measure: Global impression of clinical severity

Time: Baseline, Day 14 and Day 28

Measure: Modified fatigue impact scale

Time: Baseline, Day 14 and Day 28

6 A Phase IIa Double-Blind, Randomized, Placebo-Controlled, Dose-Finding Study of Idebenone in the Treatment of Mitochondrial Encephalopathy Lactic Acidosis and Stroke-like Episodes

The purpose of this study is to compare the efficacy of two (2) different doses of idebenone with that of a placebo over a one month period on cerebral lactate concentration as measured by magnetic resonance spectroscopy.

NCT00887562 MELAS Syndrome Drug: Idebenone Drug: Idebenone Other: Placebo
MeSH: Brain Diseases Acidosis Acidosis, Lactic MELAS Syndrome Mitochondrial Encephalomyopathies
HPO: Acidosis Encephalopathy Lactic acidosis Metabolic acidosis

Inclusion Criteria: - Diagnosis of MELAS with confirmed A3243G mtDNA mutation, or evidence of central nervous system involvement (cognitive problems, migraines, memory loss) - Cerebral lactate level equal to or greater than 5.0 i.u. at baseline - Patients at least 8 and < 65 years of age at baseline - Patients with a body weight > 37 kg/82 lbs at baseline - Stable co-medication/vitamins/supplements within 1 month prior to baseline - Patients who in the opinion of the investigator are able to comply with the requirements of the study, including swallowing the study medication - Negative urine pregnancy test at screening and baseline (female patients of childbearing potential) Exclusion Criteria: - Contraindication to MRS (e.g. --- A3243G ---

metal implant, claustrophobia) - Stroke like event within 2 months prior to baseline - Treatment with idebenone at any dose, or coenzyme Q10 at doses above 100mg/d within 1 month prior to baseline - Inadequate contraception use - Pregnancy and/or breast-feeding - Clinically significant abnormalities of clinical hematology or biochemistry including, but not limited to, elevations greater than 1.5 times the upper limit of normal of aspartate aminotransferase (AST), alanine aminotransferase (ALT) or creatinine - Current abuse of drugs or alcohol - Participation in a trial of another investigational drug within the last month - Other factor that, in the investigator's opinion, excludes the patient from entering the study Inclusion Criteria: - Diagnosis of MELAS with confirmed A3243G mtDNA mutation, or evidence of central nervous system involvement (cognitive problems, migraines, memory loss) - Cerebral lactate level equal to or greater than 5.0 i.u. at baseline - Patients at least 8 and < 65 years of age at baseline - Patients with a body weight > 37 kg/82 lbs at baseline - Stable co-medication/vitamins/supplements within 1 month prior to baseline - Patients who in the opinion of the investigator are able to comply with the requirements of the study, including swallowing the study medication - Negative urine pregnancy test at screening and baseline (female patients of childbearing potential) Exclusion Criteria: - Contraindication to MRS (e.g. --- A3243G ---

Given that there is no effective treatment for MELAS, the investigators propose a Phase II proof of concept trial of idebenone to study its preliminary efficacy in patients with MELAS and the A3243G mtDNA mutation, and to study its safety and tolerability in this patient group. --- A3243G ---

The investigators propose to evaluate 21 patients with the A3243G mitochondrial DNA mutation and MELAS (defined by a history of either seizures or stroke). --- A3243G ---

Primary Outcomes

Description: To compare the efficacy of 1 month treatment with 2 different doses of idebenone with that of placebo on cerebral lactate concentration as measured by magnetic resonance spectroscopy (MRS)

Measure: Mean Change in Cerebral Lactate Concentration (as Measured by Magnetic Resonance Spectroscopy)

Time: Up to 4 weeks from baseline

Secondary Outcomes

Description: To compare the efficacy of 1 month treatment with 2 different doses of idebenone with that of placebo on venous lactate concentration

Measure: Mean Change in Venous Lactate Concentration

Time: Up to 4 weeks from baseline

Description: To assess changes following 1 month treatment with 2 different doses of idebenone with that of placebo in fatigue as assessed by the Fatigue Severity Scale (FSS). Scale score minimum is 9 (least fatigue) and maximum is 63 (maximum fatigue). Scores of 36 or less indicate possibility that patient may not be suffering from fatigue, while scores 36 and over suggest suffering from fatigue

Measure: Mean Change in Score on the Fatigue Severity Scale (FSS)

Time: Baseline and Week 4


HPO Nodes


Encephalopathy
Genes 219
GABRB1 LYRM7 ATP5F1D CYC1 GABRB2 GABRB3 CDKN2A UBA5 ATP6V1A TREX1 IBA57 AARS TRIT1 PNKP HTRA1 NDUFS7 PIGP WWOX AMACR NADK2 SPTAN1 GLYCTK CPLX1 FADD GBA DHDDS SIK1 RNF13 GCDH CHD2 HMGCL NDUFA6 GCSH ACY1 MDH2 MDM2 SUCLG1 SUCLA2 COQ2 NDUFB3 BCS1L MECP2 ZNHIT3 MEF2C NDUFS3 NAGS NDUFS4 TUFM STAT2 NDUFS6 HNRNPU ITPA TBC1D24 NDUFV2 FBXL4 SYNGAP1 CDKL5 FCSK GUF1 KCNA2 NEUROD2 SERPINI1 STXBP1 PIGA CLCN4 KCNQ5 KCNB1 NRXN1 SYNJ1 CLPB CLCNKB GLDC SCN1A DGUOK SCN1B FRRS1L SCN2A RNASEH2C GLS TMEM70 SCN3A COQ9 SLC35A2 CLTC ARHGEF9 SCN8A GLUL PLCB1 KCNQ2 PACS2 DLD LIPT2 FGF12 GNAO1 DENND5A DNM1 CLP1 CARS2 GPT2 D2HGDH KCNT1 KYNU NAXE TBCD TBCE RNASEH2B CACNA1A CACNA1E LIAS TCF4 RANBP2 AMT SLC25A20 CUX2 CAD ROGDI ARV1 SZT2 NDUFAF2 PMPCB GPR35 ACAD9 HCN1 NTRK2 ARX SLC35A1 SLC19A3 XIAP COX15 DNM1L TWNK TSEN54 CNKSR2 GRIN1 ST3GAL3 GRIN2B GRIN2D CPT1A GABBR2 BOLA3 SLC1A2 YWHAG ADAM22 SLC2A1 TSFM CYFIP2 COG8 NECAP1 NDUFA11 TRAK1 PNPO EEF1A2 TGFB1 SLC6A1 UGT1A1 MST1 SLC25A22 SLC6A9 NBAS TH WDR45 NDUFAF4 CCDC88A PPP3CA SLC25A12 NDUFAF1 TRNC SLC12A3 KCNT2 COX1 ATAD1 COX2 COX3 CYTB TRAPPC12 TK2 COQ4 SLC25A1 ETHE1 ALG9 SLC25A15 NUS1 ND1 ASNS SLC22A5 AP3B2 TBCK NAXD ND5 ND6 TIMM50 CHEK2 DOCK7 CNPY3 SLC13A5 MPC1 TRNF SERAC1 BSCL2 TRNK TRNL1 HADH TRNQ ATP1A3 TRNS1 TRNS2 TRNV TRNW MAPK10 SH2D1A PCCA PCCB PCK1 ATP5F1A UNC80 PRNP TP53 GABRA1 PHACTR1
Metabolic acidosis
Genes 85
IVD SLC25A3 MMAA CUL3 CACNA1S NDUFB11 IBA57 DPYS GK NDUFAF4 NDUFS7 VIPAS39 SLC52A1 STX3 PLVAP FBP1 NDUFAF1 GALT ACADM ACADS VPS33B AUH MYO5B ACAT1 EHHADH HPD BTD KCNJ5 GLYCTK PPA2 PRDX1 AGXT SCNN1A SCNN1B C1QBP SCNN1G HLCS DLD PLPBP UQCC2 GCDH NR3C2 HMGCL MCEE HSD17B10 UQCRB NDUFA2 MCCC2 CTNS UQCRC2 MCCC1 NDUFA6 TANGO2 MTO1 FH NDUFA9 SLC25A19 LCT HNF4A ALDOB GFM1 MMAB WNK1 OGDH PCCA PCCB BCS1L ALDH6A1 NDUFB8 KYNU SLC37A4 MRPS22 MMUT PDHX NDUFV1 TUFM RYR1 MMACHC GSS SLC4A1 MLYCD INVS CA5A PNPO SLC5A1
Lactic acidosis
Genes 153
LYRM7 ATP5F1D CYC1 ATP5F1E TACO1 COX20 MPV17 SFXN4 SDHAF1 USP18 LIAS SCO2 IBA57 PDSS2 FOXRED1 NDUFAF5 SLC25A4 MICOS13 EARS2 PDHA1 LYRM4 PDHB PET100 ACAD9 RRM2B NADK2 POLG NDUFAF3 COX6B1 LARS COX8A COX10 COX15 DNM1L MRPS16 BCKDHA BCKDHB FASTKD2 SLC25A26 DBT NDUFA10 SUCLG1 TYMP SUCLA2 COQ2 LARS2 NDUFB3 BOLA3 OGDH BCS1L PREPL COA8 GFER NFU1 NDUFS1 WARS2 ELAC2 NDUFS2 NDUFS3 PDHX NDUFS4 TUFM TSFM NDUFS6 PPM1B SLC3A1 NDUFA11 NDUFV2 MLYCD FBXL4 YARS2 TPK1 SLC25A3 TRMU MRPS7 PHKG2 LRPPRC LIPT1 TRMT10C COA6 TRNT1 FBP1 TRNC COX1 AARS2 COX2 COX3 COQ8A CYTB UQCC3 FARS2 TK2 PDP1 SURF1 ETHE1 DGUOK ND1 ISCU TMEM70 COQ9 ND4 MRPS14 ND5 MIPEP ND6 SCO1 PUS1 AGK MRPS34 DLAT DLD MPC1 TRNE LIPT2 TRNF CAMKMT PNPLA8 NDUFAF6 SERAC1 HSD17B10 TRNH HADHA TRNK TRNL1 HADHB HADH TRNN TRNQ TANGO2 MTO1 RMND1 TRNS1 FH TRNS2 GTPBP3 TRNT TRNV SLC25A19 TRNW PC ALDOB PCCA PCCB G6PC SLC37A4 PCK1 NAXE SDHA TAZ SDHD COX14 CA5A ATPAF2