SNPMiner Trials by Shray Alag


SNPMiner Trials: Clinical Trial Report


Report for Clinical Trial NCT04009408

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

Interventional Study of Expiratory Muscle Strength Training as a Treatment in Neuromuscular Disorders

The purpose of this study is to investigate the impact of expiratory muscle strength training (EMST) on the swallowing, breathing, oral intake, quality of life and cough function of people with oculopharyngeal muscular dystrophy (OPMD).

NCT04009408 Oculopharyngeal Muscular Dystrophy Muscular Dystrophies Myopathy; Hereditary
MeSH: Muscular Dystrophies Muscular Diseases Neuromuscular Diseases Muscular Dystrophy, Oculopharyngeal
HPO: Muscular dystrophy Myopathy

1 Interventions

Name: Expiratory muscle strength therapy (EMST150, Aspire LLC)

Description: Active therapy calibrated to the participant's maximum expiratory pressure

Type: Device

EMST therapy Sham EMST therapy


Primary Outcomes

Description: Global swallowing function is rated from videofluoroscopy swallowing studies (VFSS), using the Dynamic Imaging Grade of Swallowing Toxicity (DIGEST), a validated 5-point scale. Global swallowing function is rated from 0-4: 0 = no pharyngeal dysphagia; 1 = mild; 2 = moderate; 3 = severe; 4 = life-threatening. A lower score is a better outcome.

Measure: Global Swallowing Function

Time: Change in score from week 0 to week 5

Secondary Outcomes

Description: Global swallowing function is rated from videofluoroscopy swallowing studies (VFSS), using the Dynamic Imaging Grade of Swallowing Toxicity (DIGEST), a validated 5-point scale. Global swallowing function is rated from 0-4: 0 = no pharyngeal dysphagia; 1 = mild; 2 = moderate; 3 = severe; 4 = life-threatening.

Measure: Global Swallowing Function

Time: Change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: MEP is a measure of respiratory muscle strength and is assessed with a handheld manometer, measured in centimetres of water (cmH2O). A higher score is a better outcome.

Measure: Maximum expiratory pressure (MEP)

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: Measure of cough strength that is assessed using a spirometer, measured in litres per minute (L/min). A higher score is a better outcome.

Measure: Volitional cough strength (peak cough flow)

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: Measure of how much air is exhaled during forced exhalation and is assessed with a spirometer, measured in litres. A higher score is a better outcome.

Measure: Forced vital capacity (FVC)

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: A measure daily nutritional and hydration consumption. Oral intake is assessed using the Functional Oral Intake Scale (FOIS), a validated 7-point ordinal scale (1 = no oral intake; 2 = tube dependent with minimal/inconsistent oral intake; 3 = tube supplements with consistent oral intake; 4 = total oral intake in single consistency; 5 = total oral intake of multiple consistencies requiring special preparation; 6 = total oral intake with no special preparation, but must avoid specific foods or liquid items; 7 = total oral intake with no restrictions). A higher score is a better outcome.

Measure: Oral Intake

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: Will be measured using the Eating Assessment Tool-10 (EAT-10), a self-administered, symptom-specific outcome instrument for dysphagia. The EAT-10 allows patients to rate their swallowing symptoms on scale of 0 = no problem to 4 = severe problem. A lower score is a better outcome.

Measure: Self-perceived swallowing impairment

Time: Change in score from week 0 to week 5; change in score from week 0 to week 15; change in score from week 5 to week 15.

Description: An optional blood sample will be collected for biomarker analysis, to identify correlations with clinical response. We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status. For these 5 genetic biomarkers, participants will be scored as having zero, one, or two alleles. This information will be used in subgroup analyses for the primary and secondary outcomes.

Measure: Biomarker analyses

Time: Baseline measurement (week 0)

Purpose: Treatment

Allocation: Randomized

Parallel Assignment


There are 4 SNPs

SNPs


1 rs10835211

We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status.


2 rs165599

We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status.


3 rs17601696

We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status.


4 rs6265

We will measure genetic biomarkers associated with swallowing function including rs6265, rs165599, rs10835211, rs17601696, and APOE4 genotype status.



HPO Nodes


HPO:
Muscular dystrophy
Genes 77
COL4A1 CRYAB POMT2 HNRNPDL COL6A1 COL6A2 TRAPPC11 COL6A3 BVES PSAT1 MYH7 PNKP GK COL12A1 LIPE PIEZO2 POMGNT2 LMNA B4GAT1 FKTN FKRP SGCA TRIM32 SGCB SGCD SGCG SYNE1 FRG1 INPP5K SMCHD1 B3GALNT2 SYNE2 CAPN3 ACTA1 BUB1 BAG3 BUB1B NR0B1 AHCY DNAJB6 LAMA2 DAG1 DPM3 POMGNT1 CRPPA ANO5 CAVIN1 TMEM43 RXYLT1 POMT1 EMD CAV3 PLEC DMD ITGA7 BUB3 CHKB FHL1 DYSF POMK GMPPB CEP57 SELENON TRIP13 TTN HNRNPA1 TOR1AIP1 TCAP DPM1 TRIP4 HNRNPA2B1 TNPO3 PHGDH RYR1 SIL1 LARGE1 LIMS2
Myopathy
Genes 288
TPM1 TPM2 TPM3 GABRD SDHAF1 MYF6 MYH2 MYH6 MYH7 ZBTB20 MYL2 ACACA PSEN1 PSEN2 ACADL ACADS CENPF MYO9A CCDC174 CFL2 INPP5K ACTA1 GAS1 MAP3K20 SLC5A7 ACTC1 CDH23 CHAT ANO5 AK9 KLHL41 ACTN2 ITGA7 NEB PTCH1 CHKB PTEN DYSF COLQ NDUFB3 PGAM2 TTN HNRNPA1 TRIP4 HNRNPA2B1 CHRNA1 PGK1 GFER NDUFS2 GFPT1 CHRNB1 RYR1 CHRND CHRNE B4GALT1 SLC25A3 STIM1 NEFH DES UBA1 GK KLHL9 PANK2 GCLC FKTN GLI2 AGL ALG14 MYPN SYNE2 SCN4A SCN5A VAMP1 VPS13A C1QBP MYMK AP1S2 FGF8 PYGM AKT1 FGFR1 PLEC DMD MYO18B RMND1 PRKAG2 FOXH1 FHL1 ALDOA FHL2 DNA2 GMPPB NODAL PLN SDHA TAZ SDHB VCL VCP SDHD ALPL CDON DNM2 FKBP14 TBCE PDE11A ADSSL1 POMT2 HNRNPDL DPAGT1 RAF1 CACNA1S COL6A1 HSPG2 COL6A2 TRAPPC11 COL6A3 FLNC PNPLA2 BIN1 COL12A1 VMA21 COL13A1 RAPSN MYOT NEBL SLC25A4 GNE DSG2 CLIP2 CISD2 FKRP SGCA WFS1 SGCB SGCD SGCG ACAD9 FOS SYNE1 KLHL40 RRM2B POLG DOK7 TAF1A B3GALNT2 CAPN3 BAG3 AGPAT2 DOLK DNAJB6 KCNAB2 SHH LAMA4 BAZ1B POMGNT1 LAMB2 XDH CRPPA DNM1L CASQ1 ABCC9 TWNK LAMP2 XK TMEM43 TDGF1 LMNB2 SYT2 CAV1 POMT1 CAV3 TXNRD2 RET PPARG RFC2 CPT2 SIX3 GTF2IRD1 NUBPL SKI DLL1 PPCS SELENON TCAP RBM20 OPA1 CSRP3 MSTO1 NARS2 ALG2 SIL1 NDUFA11 ZIC2 YARS2 ADGRG6 EPG5 CRYAB ERGIC1 TRMU TGIF1 LMOD3 USP8 ORAI1 LIMK1 LDB3 NDUFAF4 GTF2I ABHD5 MTAP ATP6 NDUFAF1 TRNC LMNA COX1 TIA1 COX2 COX3 MTMR14 CYTB MYH14 TRIM32 PABPN1 SLC18A3 TK2 PDE8B GYG1 SLC25A1 FLAD1 ANKRD1 ND1 ISCU SAR1B ND2 SLC22A5 ND4 ND4L ND5 ND6 PRKACA RNR1 PRKAR1A PUS1 GATAD1 LRP4 AGK KBTBD13 TMPO TRNE TRNF CAVIN1 BSCL2 TRNH TRNI ELN HADHA TRNK TRNL1 HADHB SNAP25 RERE CTNS EMD TRNP TRNQ TRNS1 TNNC1 TRNS2 POLG2 TRNT TRNV TNNI3 TRNW TNNT1 TNNT2 SUFU PRDM16 NEXN AGRN TNPO3 HACD1 TBL2 DISP1 MUSK MGME1 LARGE1 MYBPC3 TPI1