SNPMiner Trials by Shray Alag


SNPMiner Trials: SNP Report


Report for SNP rs7799039

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

There is one clinical trial.

Clinical Trials


1 Clozapine Induced Weight Gain: A Pharmacogenetic Study

Clozapine is prescribed to patients with psychosis in whom other treatments have not worked. Research has shown, however, that clozapine may be associated with weight gain and abnormal blood sugar levels in some patients. There is strong evidence to suggest that genetic variation between individuals plays an important role in the development of these side effects in response to the medication. Our research aims to evaluate the effects of two genes and the blood level of clozapine on side-effects such as weight changes and blood sugar levels in patients receiving clozapine treatment. From out-patient clinics in Cwm Taf UHB, the investigators aim to recruit 160 patients who are taking clozapine; collect information/ measurements from recruits relating to size/ weight/ BMI, risk of diabetes and blood samples to measure markers of blood sugar, fat/lipids, clozapine and its breakdown products, blood cells and variants of two specific genes. From this information the investigators will be particularly interested to understand if there is any association between the variation in these two genes with weight gain or changes in blood sugar, in patients taking clozapine.

NCT03996356 Weight Gain Antipsychotic Agents Pharmacogenetics Other: No study intervention - observational study
MeSH: Body Weight Weight Gain
HPO: Increased body weight

BMI will be calculated by weight (kg)/ height^2 (m^2).. Leptin gene promoter region single nucleotide polymorphisms (SNPs) (rs7799039).

Primary Outcomes

Description: BMI will be calculated by weight (kg)/ height^2 (m^2).

Measure: Body-mass index (BMI)

Time: 12 months

Description: SNPs will be determined by polymerase chain reaction followed by restriction fragment length polymorphism analysis to determine (c.-2548G or c.-2548A) .

Measure: Leptin gene promoter region single nucleotide polymorphisms (SNPs) (rs7799039)

Time: 12 months

Description: SNPs will be determined by polymerase chain reaction followed by restriction fragment length polymorphism analysis to determine (c.-759C or c.-759T) .

Measure: Serotonin 5-HT 2C receptor gene single nucleotide polymorphisms (SNPs) (rs3813929)

Time: 12 months

Secondary Outcomes

Description: Haemoglobin A1c concentrations will be determined by ion-exchange HPLC (G8, Tosoh, Amsterdam, Netherlands)

Measure: Blood haemoglobin A1c concentration

Time: 6 months

Description: Waist:hip ratio will be calculated by waist circumference (cm)/hips circumference (cm)

Measure: Waist:hip ratio

Time: 12 months

Description: Serum lipid profiles will include total cholesterol, HDL cholesterol, LDL cholesterol and triglyceride. These will be measured by enzymatic colorimetric methods on cobas-Roche analysers (Roche, Burges Hill, UK) except LDL cholesterol, which will be calculated using the Friedewald equation ([LDL cholesterol] = [Total cholesterol] - ([Triglyceride] / 2.2) - [HDL cholesterol]

Measure: Lipid profile

Time: 12 months

Description: Clinical Global Impression (CGI) scale is a validated tool to assess clozapine side effects (Ref: Guy W, editor. ECDEU Assessment Manual for Psychopharmacology. 1976. Rockville,MD, U.S. Department of Health, Education, and Welfare)

Measure: Clozapine side effects assessment by Clinical Global Impression (CGI) scale

Time: 12 months

Description: Clozapine:nor clozapine ratio is calculated by clozapine (ug/L)/ nor clozapine (ug/L) both measured by high-performance liquid chromatography with diode-array detection.

Measure: Clozapine:nor clozapine ratio

Time: 12 months


HPO Nodes


Increased body weight
Genes 354
MYT1L SOX2 MKRN3 PCSK1 SOX3 MKKS RAB23 GABRD CFH SNORD115-1 SPATA7 PIGN SOX10 CERKL PRPF31 MYF6 LRAT IFT140 ARL2BP PNKP MAK CNNM2 AHI1 ABCA4 PDE4D ZBTB20 PDE6A DIS3L2 ATP7B PDE6G IMPDH1 HDAC4 CEL ATRX TRAF3IP1 PDE6B PDSS1 CYP7A1 INS HLA-DQB1 IFT172 KIZ CDHR1 SMC1A HLA-DRB1 CYP19A1 RPS6KA3 SDCCAG8 IQSEC2 DHX38 APC2 HDAC8 MC4R GATA4 PDX1 IPW BBS1 PWRN1 BBS2 CDH23 BBS4 DHDDS SRY CD46 NDN PRPF6 GCK PSMD12 WNT4 AGBL5 DCC PTCH1 RREB1 PTEN HNF4A SLC10A7 TRIP12 BBS9 TUB MECP2 TRIP4 BDNF SNORD116-1 HESX1 RYR1 FGF17 MKS1 TULP1 HELLPAR HIRA TNFSF4 MEN1 BLK GHR SEMA3A XYLT1 ARL6 TTC8 PROM1 BPTF NEK2 ZDHHC15 ANOS1 SAG UBE2A NEUROD1 KIDINS220 KISS1R PNPLA6 PIGA ALMS1 BRAF PROKR2 CANT1 KLHL7 REEP6 UBE3A FAM161A GLI3 ABCC8 HS6ST1 RBMX KCNJ11 UCP2 MCM3AP SYNE2 UFD1 HACE1 ARNT2 ARL13B NPAP1 SCAPER FSCN2 AHR PRCD KMT2A FGF8 AKT2 FGFR1 FGFR3 TACR3 FLRT3 GNAS HSD11B1 PWAR1 SEMA4A HERC2 MERTK FTO PRMT7 FHL1 TMCO1 USH2A CLRN1 CNGB1 CNGA1 KDM6A NIPBL NR0B2 PHIP TRAPPC9 TBX1 MOG DNM2 CA4 IMPG2 PDE11A GP1BB RAD21 CUL4B PROK2 NPHP1 FLII CACNA1S IFT27 GNAS-AS1 KLF11 DPYD TBX3 PIGL HNF1A BEST1 BIN1 NR2E3 RAP1A RAP1B MAGEL2 DEAF1 FMR1 COMT OFD1 WDR34 SLC25A4 NRL CLIP2 IFT74 RNPC3 INPP5E SYNE1 NTRK2 DUSP6 LZTFL1 CEP290 RNF135 RBP3 HGSNAT KCNAB2 WT1 BBIP1 POMC NSD1 KIAA1549 PHF6 BAZ1B RDH12 POMGNT1 PRPH2 SHOX ARHGEF18 ABCC9 PCARE POU3F4 SPG11 CHD7 TMEM43 SIN3A AIP BBS5 H6PD HUWE1 APOE IDH3B PPARG SIM1 RFC2 XRCC4 SLC7A7 GTF2IRD1 SKI PRPF8 CFI ADNP THOC2 CCDC141 CREBBP RGR ZNF365 SLC7A14 JMJD1C SHANK3 LEP WDPCP LEPR CEP164 SH2B1 EDNRB RHO CRB1 KIF7 BBS10 MKRN3-AS1 MTFMT CRX ZNF711 RLBP1 AP4E1 USP8 MLXIPL LIMK1 SETD2 EYS AP4S1 ARL3 PIGT KMT2D IGF1 LIPE OTX2 IGF1R GTF2I IGFALS THRA NSMF EGF SEC24C LMNA MEGF8 GUCA1B MTMR14 IFT88 ARVCF WDR11 SMC3 PRPF4 FEZF1 P2RY11 PRPF3 SETD5 TRIM32 MTOR BBS7 ATP6AP2 EIF2S3 ZNF408 ARMC5 SPRY4 DYRK1B PRKACA EHMT1 PRKAR1A FIBP APPL1 FOXP1 ROM1 RP9 RP1 ELN PAX4 RP2 RPGR PAX6 RERE EMD AP4M1 CTNNB1 C8ORF37 KCNJ18 IGSF1 AP4B1 LAS1L TOPORS STX16 SUFU IL17RD ERMARD CTSH PRDM16 BBS12 RPE65 SNRNP200 SNRPN TBL2 EP300 VPS13B HCRT AFF4 MAN1B1 TP53 RAI1 CEP19 SMAD4 GABRA3 PCNT ZNF513