SNPMiner Trials by Shray Alag


SNPMiner Trials: SNP Report


Report for SNP rs3114018

Developed by Shray Alag, 2019.
SNP Clinical Trial Gene

There is one clinical trial.

Clinical Trials


1 Relation of Genetic Polymorphism of ABCG2 Gene And Occurrence of Oxaliplatin - Induced Peripheral Neuropathy in Patients With Gastrointestinal Tract Cancer

This study will examine DNA from Gastrointestinal Tract of cancer patients treated with oxaliplatin to look for a variation (mutation) of the ABCG2 gene that may lead to drug-induced peripheral neuropathy in certain patients. The DNA will be extracted from patients' blood samples and are analyzed for the ABCG2 single nucleotide polymorphism (G34A - rs2231137 and A/A -rs3114018 genotypes) and correlated with peripheral neuropathy grades.

NCT02428101 Gastrointestinal Tract Cancer Peripheral Neuropathy Genetic: polymorphism analysis
MeSH: Peripheral Nervous System Diseases Gastrointestinal Neoplasms
HPO: Abnormal peripheral nervous system morphology Malignant gastrointestinal tract tumors Neoplasm of the gastrointestinal tract Peripheral neuropathy Polyneuropathy

- Neurologic disease or patients with disease impairing the neurologic function affecting Gastrointestinal Tract Cancer Peripheral Neuropathy Peripheral Nervous System Diseases Gastrointestinal Neoplasms Pharmacogenetic analysis/genotyping : Genotyping is conducted via High Resolution Melting (HRM) TECHNIQUE, To confirm the genotyping results, the Polymerase chain reaction (PCR) product of the samples will be examine via direct sequencing using 3500 Genetic analyzer from ThermoFisher (applied biosystem) at two ABCG2 loci using the following PCR primers: 1-ABCG2 G34A - rs2231137 Forward : 5'-TGC AAT CTC ATT TAT CTG GAC TA-'3 Reverse : 5'-AAT GCC TTC AGG TCA TTG GA-'3 -Annealing temp :57 -Product size : 163 2- ABCG2 A/A - rs3114018 Forward : 5'- TGATGTTCCTTCAGCCACTG-'3 Reverse : 5'-TTGTGGAAACCTCACAAAAGTG-'3 - Annealing temp : 59 - Product size : 124

Primary Outcomes

Description: Peripheral Neuropathy Toxicity will be assessed every cycle for six months using the National Cancer Institute Common Toxicity Criteria (NCI-CTCAE). Patients will be assigned to 4 groups according to the grades of neuropathy.

Measure: Correlation of single nucleotide polymorphisms of ABCG2 gene (G34A - rs2231137 and A/A -rs3114018 genotypes) with peripheral neuropathy grades, using the National Cancer Institute Common Toxicity Criteria (NCI-CTCAE)

Time: After 6 cycles of chemotherapy (each cycle is15 days), for six months


HPO Nodes


Polyneuropathy
Genes 52
SLC12A6 MYD88 ERCC8 SH3TC2 DMXL2 LDB3 RPIA SETX ERCC6 MYOT ATP7B ATP6 PSAP DHH COX3 ARL6IP1 CYTB GCLC AIFM1 PDK3 SEPTIN9 DGUOK PDYN C12ORF65 ND1 ND2 ND4 ND4L ND5 FAM126A ND6 CD59 PEX12 CYP7B1 ALAD FUCA1 ABCD1 NGLY1 PEX11B GRM1 SLC25A19 ABHD12 TTR PIK3R5 NAGS COQ7 EDNRB GSN TBC1D24 PMM2 SNAP29 PRPS1
Neoplasm of the gastrointestinal tract
Genes 211
CDKN1A CDKN1B CDKN1C CDKN2A HFE CDKN2B CDKN2C CDKN2D IL12A H19-ICR TMEM67 IL12RB1 TREX1 ERBB2 POU6F2 BRIP1 DIS3L2 ATP7B PSAP WWOX CEL SPIB ACD ATRX PDGFRA PDGFRL TNFSF12 INS SRC MC1R PDX1 BARD1 HMBS IRF1 NBN IRF5 RPS19 DAXX RPS20 GCK KEAP1 ACVRL1 DCC PTCH1 PTEN MDM2 GDF2 HNF4A TRIP13 GDNF RNF43 TERF2IP STAT1 AXIN1 AXIN2 BAP1 MEN1 BLK BLM FAH MET STK11 PTPN3 BMPR1A SERPINA1 NEUROD1 DLC1 ICOS GPC3 MGMT BRCA1 BRCA2 PIK3CA ABCC8 JAG1 NFKB1 KCNJ11 NFKB2 BUB1 BUB1B MITF AHCY GPC4 MLH1 CTHRC1 TJP2 KCNQ1 CC2D2A COL14A1 AKT1 BCL10 DLEC1 FGFR3 FGFR2 GNAS SEMA4A UROD FH KIT KCNQ1OT1 TNFSF15 SEC23B SDHA SDHB SDHC SDHD RAD21 FOXE1 RAD51 RAD51C PMS1 RAD51D KRAS MRE11 TCF4 KLF11 HNF1A SEMA3C PMS2 RPGRIP1L NRAS COMP RHBDF2 KLF6 NRTN DOCK8 GPR35 INPP5E POLD1 NTHL1 POLE POT1 SH3KBP1 WRN ASCC1 WT1 APC CASP8 POU2AF1 CASP10 RELA MSH2 MSH3 MINPP1 REST RET ECE1 FAS FASLG CR2 AAGAB TERT DICER1 PALB2 EDN3 EDNRB FAN1 RAD50 MSR1 MST1 TGFBR2 MSH6 RASGRP1 SEMA3D KLLN MLH3 PIEZO2 IGF2 ARSA IGF2R MMEL1 LMNA RNF6 CD19 MS4A1 TRIM28 SLC25A13 SETBP1 CHEK2 PTCH2 TNFRSF13C PRKAR1A ABCB11 TNFRSF13B FLCN APPL1 PRKCD C11ORF95 CD81 HABP2 PAX4 GREM1 CTNNB1 SPRTN BUB3 HBB SUFU CEP57 ENG CDH1 EPCAM G6PC SLC37A4 PALLD TNPO3 EP300 MUTYH H19 TP53 SMAD4 CDK4